Gene Bcen_0560 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBcen_0560 
Symbol 
ID4093791 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia cenocepacia AU 1054 
KingdomBacteria 
Replicon accessionNC_008060 
Strand- 
Start bp606617 
End bp607285 
Gene Length669 bp 
Protein Length222 aa 
Translation table11 
GC content61% 
IMG OID638013825 
ProductOmpA/MotB 
Protein accessionYP_620444 
Protein GI107022117 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.370432 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATAAAC TTTCAAAGCT CGCGTTCATT GCAGCTACCG CAGTTATGGC TGCATCCGCT 
TCGGCACAGT CGGTGCCGGC GTCGCGTCAA GCCGTCAATG ACAACTGGGT GAACGGCACG 
GGCGAATGGG TGTGGATGAA CGGCACGAAC GAGCTCTGCT GGCGCGATGC GTTCTGGACG 
CCGGCCACCG CCAACGCGAA GTGCGATGGC GCACTGGTCG CCCAGGCACC GCAGCCGCCG 
GTCGCTCCGG TCGCTCCGGC CATCACGAGC CAGAAGATCA CGTATCAAGC TGACGCACTG 
TTCGACTTCG ACAAGGCAAC GCTCAAGCCG CTGGGCAAGC AAAAGCTGGA CGAACTGGCT 
TCGAAGATCG AAGGCATGAA CACGGAAGTG GTCGTCGCAA CGGGCTACAC GGACCGTATC 
GGTTCGGACA AGTACAACGA CCGTCTGTCG CTGCGCCGTG CGCAAGCCGT GAAGTCGTAC 
CTGGTCAGCA AGGGTGTGCC GGCCAACAAG ATCTACACGG AAGGCAAGGG CAAGCGCAAC 
CCGGTTACGA CTGGCTGCAA CCAGAAGAAC CGCAAGCAAC TCATCGCCTG CCTCGCACCG 
GACCGCCGCG TGGAAGTCGA AGTGGTTGGT ACGCAGCAAG TGCAGAAGAC GACCGTTCCG 
GCAAACTAA
 
Protein sequence
MNKLSKLAFI AATAVMAASA SAQSVPASRQ AVNDNWVNGT GEWVWMNGTN ELCWRDAFWT 
PATANAKCDG ALVAQAPQPP VAPVAPAITS QKITYQADAL FDFDKATLKP LGKQKLDELA 
SKIEGMNTEV VVATGYTDRI GSDKYNDRLS LRRAQAVKSY LVSKGVPANK IYTEGKGKRN 
PVTTGCNQKN RKQLIACLAP DRRVEVEVVG TQQVQKTTVP AN