| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_3138 |
|---|
| Symbol | |
|---|
| ID | 4082394 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingopyxis alaskensis RB2256 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008048 |
|---|
| Strand | + |
|---|
| Start bp | 3289366 |
|---|
| End bp | 3291087 |
|---|
| Gene Length | 1722 bp |
|---|
| Protein Length | 573 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 638011523 |
|---|
| Product | apolipoprotein N-acyltransferase |
|---|
| Protein accession | YP_618174 |
|---|
| Protein GI | 103488613 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0815] Apolipoprotein N-acyltransferase |
|---|
| TIGRFAM ID | [TIGR00546] apolipoprotein N-acyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.632903 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACCGCGA CACGCTCCCG CATCGCCGCT TTGGCCGACC GCTGGCCAAA GTCCCTCGCC
CTGTTGCTCG GCGCCGTTTC GGCGACGGGC TTCGCGCCGC TGCACCTCTG GCCGCTGACC
TTGCTCGCGC TCGGCGGCTG GATGGCGATC GTCGCGCGCA GCCCGCGCGG CTGGCGCGCC
TTCGGGACCG GCTGGGCGTT CGGCGTCGGT CATTTCGTCG TCGGCCTCAA CTGGATCGCG
ACCGCCTTTA CCTATCAGGC GGCGATGCCC GCCTGGCTGG GGTGGATCGC GGTTCTGCTG
CTCGCGCTGT ATCTCGCGGT GTATCCGGCG CTGGCGGCGT GGGGGGCGTG GCTGACGCAA
AAAATCGTCG CCCCCGCGCA GGGTGGCGGG AGACGCGTGA CTCCCGCCAC GGCCGCTGGC
GGTTTATCCG GCGACGATGG CGCAAGGCCG ACGGCGGCCC CCGCCTTCGC GGGGGCGACG
CTGTCCTTCG TCCTCGCCTT TGCCGCGCTG TGGACGCTCA CCGAATGGCT GCGCAGCTGG
GTGTTTACAG GTTTCGCGTG GAATCCGCTT GTCGCAACAA CCGGCGACTT TTTGGGCCTG
CTGCGATTGA TCGGCTCCTA TGGTGCGTCG GCCACCGTGA TATTGGCGGC GGGTTATGTG
CTGTGGGTGG TCGGATCGGG TGTGGAACGC ATCCGAAGAA AAGATTCGCT CCCGGAACCG
AGTCCTCAAT CCCAGCTTCA ACAACAATTG GCTGCTGGTG CTGTCATCGC CGGCTTTCTG
GCTTTGGTCT ATCTGCTGCC AGACCATTCG TCCTCACCAC CGGCAGCGGC GGATGCCACC
CCCATCACCG TCGTCCAGCC CAATATCGGC CAGCAGGACA AATGGGAGGG GAGCAAGGCC
GACGCCAATT TCGCCAAGCT CGCGCGGCTG ACGACGCCGA TGGACGACAC GCCGCGGCTG
ATCCTGTGGC CCGAGGCGGC GGTGCCCGAC TATCTCGAAT GGGGCTATCC CGCCATCTAT
TACGAGCGCT CGCCCGCCGA GGCGCGGCGG CGGATCACCG ACCTGATGAA CGCGGGCGAC
GTGATGCTGC TCGGCGCGCT CAAGCTCGAA ATGGACGAGG GGGGCGAGGT CGTCGGCGCG
CGCAACGCGG TGATGACGCT TCACGCCGAT GGCACGCTGG GGCCGCGCTA TGACAAGGCG
CATCTCGTTC CCTATGGCGA ATATCTGCCG ATGCGACCCG TCCTCTCGGC GATCGGACTG
TCGCGGCTTG CGCCCGGCGA CATCGATTTC TGGCCCGGCC CGGGACCGCG CACGATCGAC
CTCGGCGCCT TCGGCCGCAT CGGCCTGCAA ATCTGTTACG AGATCATCTT TTCGGGGCAG
GTCGTCGACC GTGACCATCG CCCCGCCTTC ATCTTCAATC CGTCGAACGA CGCCTGGTTC
GGATCGTGGG GGCCGCCGCA GCATCTGGCG CAGGCCCGCC TGCGCGCGAT CGAGGAGGGG
CTGCCCGTCG TCCGCGCGAC GCCGACGGGG ATCAGCGCGG TGATCGATGC CGACGGCCGC
ATCGTGCAAT CGCTGCCGAT GCACGCCGCG GGGCGTATCG ACACGATCGT GCCGCCCGCG
CACGAACCGA CGCTTTTCGC GCGCTTCGGC AACGCGCTGC CGGTCGGATT CGCGCTCGCG
CTGCTCGCGC TGGCCATTGC CTTTCGGCGG CGCGGACGCT AA
|
|---|
| Protein sequence | MTATRSRIAA LADRWPKSLA LLLGAVSATG FAPLHLWPLT LLALGGWMAI VARSPRGWRA
FGTGWAFGVG HFVVGLNWIA TAFTYQAAMP AWLGWIAVLL LALYLAVYPA LAAWGAWLTQ
KIVAPAQGGG RRVTPATAAG GLSGDDGARP TAAPAFAGAT LSFVLAFAAL WTLTEWLRSW
VFTGFAWNPL VATTGDFLGL LRLIGSYGAS ATVILAAGYV LWVVGSGVER IRRKDSLPEP
SPQSQLQQQL AAGAVIAGFL ALVYLLPDHS SSPPAAADAT PITVVQPNIG QQDKWEGSKA
DANFAKLARL TTPMDDTPRL ILWPEAAVPD YLEWGYPAIY YERSPAEARR RITDLMNAGD
VMLLGALKLE MDEGGEVVGA RNAVMTLHAD GTLGPRYDKA HLVPYGEYLP MRPVLSAIGL
SRLAPGDIDF WPGPGPRTID LGAFGRIGLQ ICYEIIFSGQ VVDRDHRPAF IFNPSNDAWF
GSWGPPQHLA QARLRAIEEG LPVVRATPTG ISAVIDADGR IVQSLPMHAA GRIDTIVPPA
HEPTLFARFG NALPVGFALA LLALAIAFRR RGR
|
|---|
| |