| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_3118 |
|---|
| Symbol | |
|---|
| ID | 4082704 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingopyxis alaskensis RB2256 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008048 |
|---|
| Strand | + |
|---|
| Start bp | 3267709 |
|---|
| End bp | 3269604 |
|---|
| Gene Length | 1896 bp |
|---|
| Protein Length | 631 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 638011503 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_618154 |
|---|
| Protein GI | 103488593 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0488] ATPase components of ABC transporters with duplicated ATPase domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTGACGA TCAACGGCCT CACCGTGCGC CTGGGCGGGC GCACTATCCT CGACCGCGCG
AGCGCCAGCC TGCCCGCCAA AAGCCGCACC GGCCTGATCG GCCGCAACGG CGCGGGTAAA
TCGACGCTGA TGAAGGTGAT GATCGGCCAG CTCGAAGCCG ACGAGGGTGG CATCGACATG
CCGCGCAGGA CGCGCATCGG CTATATCGCG CAGGACGCGC CGAGCGGGAG CGCGACGCCG
TTCGAGACCG TGCTCGCCGC CGATGCCGAA CGCGCGCGCC TGCTCGCCGC GTCGGAGGTC
GAGCGCGACC CGCACAAGCT GGGCGACATC CACGAAAGGC TGATCGCGAT CGATGCCTAT
ACGGCGCCCG CGCGCGCCGC GCGCATCCTG ATCGGACTGG GCTTCGACGA GGATATGCAG
GGCCAGCCGC TCGACAGCTT TTCGGGTGGG TGGAAGATGC GCGTCGCATT GGCGGCGTTG
CTCTTTTCGA ACCCCGACCT CTTGCTGCTC GACGAACCGT CGAACCACCT CGACCTCGAA
GCGACGATGT GGCTCGAAAG CTTTCTCAGA TCCTATCCGG GCCAGCTCGT CGTGATCAGC
CACGAGCGCG ACCTGCTCAA CAATGTCGTC GACCATATCC TCCACCTCGA AGGCGGAAAG
GTGACGCTCT ACCCCGGCGG TTATGACGAT TTCGAGCGGC AGCGCGCCGA GCGCATCGCA
CAGCTCGCGG CGGCGAAAGC CGCGCAGGAC GCACAGCGCG CCAAGCTCCA GGACTATGTC
GCGCGCAACA GCGCGCGCGC CTCGACCGCC AAACAGGCGC AGTCGCGCGC CAAGCAGCTC
GCGCGGATGC AGCCGATTGC GGCGGTCTCG GAAGACCCCA GCCTCGTGTT CGATTTTCCG
AGCCCCGACG AACTGAAGCC GCCGCTGATC ACGCTCGACC TCGCGAGCGT CGGCTACACG
CCGGGTGCGC CGATCCTGTC GCGGCTCAAC CTGCGCATCG ATCCCGACGA CCGCATCGCG
CTCCTCGGCC GCAACGGCAA TGGCAAGACG ACGCTCGCGC GTCTGCTCGC GGCGCAGCTC
GCGCCGATGG ACGGCGCAAT GGCGGCGTCG GGCAAGATGC GCGTCGGCTA TTTCACCCAA
TATCAGGTCG AGGAACTCGA CGGATCGGAC ACGCCCCTGG GCCATATGAC GCGCGTGATG
GCGGGCAAGA CGCCGGGCGC GGTGCGCGCG CAACTGGGGC GCTTCGGCTT CACGGGCAAC
AAGGCCACCA CCGAGGTCGG CAAGCTGTCG GGGGGCGAAC GCGCGCGGCT CGCGCTTGCG
CTGATCACGC GCGACGCGCC ACACCTTCTG ATCCTTGACG AACCGACCAA CCACCTCGAC
GTCGACGCGC GCGAGGCCCT GGTGCAGGCA CTCAACGGCT TCGACGGCGC GGTGCTGATC
GTCAGCCACG ACCGCCACAT GCTCGAACTC ACCGCCGACC GCCTCGTCCT CGTCGACGGC
GGCACGGCGC GCGAATTCGA CGGCAGCATC GACGATTATG TCGCCTTCAT CCTCGGCCAG
GGAGCCGGAA AAGGCTCGGC GGCGAACGAC GATGCGAAGG GCGCCGCCAA GCCCAAGGAC
GCGAAAGCCG CGCGGCAGGA AGCGGCGAGG GCGCGTGAAG CGCAGGCGGC GCTGCGCAAG
AGCGCGAAGG AACTGGAAGC GAAGGCCGGA AAGCTTGCAC AGCAGATCAG CGCGATCGAC
CGCGCGATGT TCGATCCGGC GGGCGCCGAA CCCGCGCTCG CGAAACTGAC GATGGGCGAC
CTCGCGCAGC GCCGCGGCAA GCTCGCCGCC GAGCTGGAGG CGGCCGAGAC GGCGTGGATG
GACGCGCTTG AAGCGATCGA GGCGGCGGCG GCTTGA
|
|---|
| Protein sequence | MLTINGLTVR LGGRTILDRA SASLPAKSRT GLIGRNGAGK STLMKVMIGQ LEADEGGIDM
PRRTRIGYIA QDAPSGSATP FETVLAADAE RARLLAASEV ERDPHKLGDI HERLIAIDAY
TAPARAARIL IGLGFDEDMQ GQPLDSFSGG WKMRVALAAL LFSNPDLLLL DEPSNHLDLE
ATMWLESFLR SYPGQLVVIS HERDLLNNVV DHILHLEGGK VTLYPGGYDD FERQRAERIA
QLAAAKAAQD AQRAKLQDYV ARNSARASTA KQAQSRAKQL ARMQPIAAVS EDPSLVFDFP
SPDELKPPLI TLDLASVGYT PGAPILSRLN LRIDPDDRIA LLGRNGNGKT TLARLLAAQL
APMDGAMAAS GKMRVGYFTQ YQVEELDGSD TPLGHMTRVM AGKTPGAVRA QLGRFGFTGN
KATTEVGKLS GGERARLALA LITRDAPHLL ILDEPTNHLD VDAREALVQA LNGFDGAVLI
VSHDRHMLEL TADRLVLVDG GTAREFDGSI DDYVAFILGQ GAGKGSAAND DAKGAAKPKD
AKAARQEAAR AREAQAALRK SAKELEAKAG KLAQQISAID RAMFDPAGAE PALAKLTMGD
LAQRRGKLAA ELEAAETAWM DALEAIEAAA A
|
|---|
| |