| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_3114 |
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| Symbol | |
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| ID | 4082701 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingopyxis alaskensis RB2256 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008048 |
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| Strand | + |
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| Start bp | 3263368 |
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| End bp | 3264795 |
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| Gene Length | 1428 bp |
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| Protein Length | 475 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 638011500 |
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| Product | RND efflux system, outer membrane lipoprotein, NodT |
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| Protein accession | YP_618151 |
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| Protein GI | 103488590 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCTCGAT TCATTTTTGT TACAACTGCG GTTCTTGGCC TGTTGGCGGG TTGCGCGAGC
GTTCCCGACC TCGGCCCCAG GCCCGTTGAG GCGGCGCCGG GGTCGCTGGT GTCAAGCGCG
TCGCTCGCTG CGGCGCCCGG CGCGTGGCCG GTGGAGGGCT GGTGGCAAGG CTTCGGCGAC
ACGCAGCTCG ATCGCCTGAT CGCCGAGGGG CTGGCGGGAT CGCCCGACGT CGCGATTGCC
GCGGCGCGCG TGCGCGCGGC GGAGGCTCTG GCGCAGCAGG CGGGCGCTGC GCTGCTGCCG
CGCGTCGGCG CCGAAGCGGG CGCGGGCGGC GTCCAGCAGA GCCGCAACAT GGGAATCCCG
CCGCAGTTCG TCCCCGACGG GGTGCGGGAC ACGGGACATG TCGCCGCGAC TTTCGGCTTT
GATCTCGACC TGTGGGGGCG CAATCGCGCC GCGCTTGCCG CCGCGACCTC CGAAGCTGAG
GCAGCGCGCG TTGATGCGGC ACAGGCGCGG CTGATGCTCG CGACGGGAAT CGCCGCGGCC
TATGCCGATC TGGCCGGCTA TTATGACGCG CTCGACGTCG CCAGCGAGGC GGTGCGCGTG
CGTAGCGCGA CCGCGCGTCT CGCCGCCGAC CGCGCGCGCG CGGGACTCGA AAATCAGGCG
AACCAGCGTC AGGCCGAAAG CCGCGCGGCG TCGGCAACGG CGGACGTCGT CGCGCTCGAA
GAAGCGATCG CGGCGACGCG CCACCGCATC GCGGCGCTCG TCGGCGCCGG CCCCGACCGC
GGTTTGTCGA TCACGCGCCC GCAGATGAGG CGGCCGACGC TGGGCCTCCC CGAAAATGCC
GGGATCGACC TGATCGGCCG CCGCCCCGAC ATCGTCGCGG CGCGGCTGCG CAGCGAGGCG
GCCGCGAAGC GTATCGACGT CGCCCGCGCC GACTTTTACC CGAATATCAG CCTGTCGGCG
CTCGTCGGGC TCCAATCGCT CGGCCTCTCC AACCTGTTCG ACGCGGGCTC CGAATATGGC
AGCGGCGGCG CGGCGATCAG TTTGCCGATC TTTGAAGGCG GGCGGCTTTC GGGGCGTTAT
CGCGGCGCCC GCGCCGACTA TGACGGCGCC ATCGCCGCCT ATGACCGCAC GCTGATCGAC
GCGCTGCGCG ACGTCGCCGA TATTGTGGCG AGCCGCGCCG CGACCGAGCG CCAGCTCGCC
GGGCGCCGGG CGGCGCTCGA GGCCGCTGCC GAAGCCTCTA AACTCGCCAA TCTGCGCTAT
CGCGCCGGCC TTGCCAACCA GATCGAACAG CTGACGGCCG AAGATTCGAT GATCGCGCTG
AACCGCGCCG TGACCGATCT CGAAGCGCGC CAGCTGGCGC TCGACATCGC GCTGATCCGG
GCGCTCGGCG GCGGATACCA GGCGCCCGAC CCGACAGGAG ACGAATGA
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| Protein sequence | MPRFIFVTTA VLGLLAGCAS VPDLGPRPVE AAPGSLVSSA SLAAAPGAWP VEGWWQGFGD
TQLDRLIAEG LAGSPDVAIA AARVRAAEAL AQQAGAALLP RVGAEAGAGG VQQSRNMGIP
PQFVPDGVRD TGHVAATFGF DLDLWGRNRA ALAAATSEAE AARVDAAQAR LMLATGIAAA
YADLAGYYDA LDVASEAVRV RSATARLAAD RARAGLENQA NQRQAESRAA SATADVVALE
EAIAATRHRI AALVGAGPDR GLSITRPQMR RPTLGLPENA GIDLIGRRPD IVAARLRSEA
AAKRIDVARA DFYPNISLSA LVGLQSLGLS NLFDAGSEYG SGGAAISLPI FEGGRLSGRY
RGARADYDGA IAAYDRTLID ALRDVADIVA SRAATERQLA GRRAALEAAA EASKLANLRY
RAGLANQIEQ LTAEDSMIAL NRAVTDLEAR QLALDIALIR ALGGGYQAPD PTGDE
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