Gene Sala_3093 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSala_3093 
Symbol 
ID4082829 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingopyxis alaskensis RB2256 
KingdomBacteria 
Replicon accessionNC_008048 
Strand
Start bp3243206 
End bp3244459 
Gene Length1254 bp 
Protein Length417 aa 
Translation table11 
GC content64% 
IMG OID638011479 
ProductNa+ dependent nucleoside transporter-like protein 
Protein accessionYP_618130 
Protein GI103488569 
COG category[F] Nucleotide transport and metabolism 
COG ID[COG1972] Nucleoside permease 
TIGRFAM ID[TIGR00804] nucleoside transporter 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.687878 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAACGCC TGATCGGTCT GGCCGGCATC GCCGCATTGC TCATGATTGC CGTGCTTTTT 
TCATCGAACC GGCGGTGGAT CCGCCTGCGC GTCGTCATCC CCGCCTTCCT GCTCCAGGCC
GGCTTCGCGG TGCTCGTCAT TGCGACGCCG TGGGGCCGCG CGGGGATCCA GGCAATGTCG
AACGGCGTTT CCAACCTGCT CGGCTATGCC AAGGCGGGCA CCGACTTCAT TTTCGGTCCG
CTGGCGTCGC CCGAAATGGG CGCGAACAGC TTTGCCATCG CCGCCTTGCC GGTGATCGTC
TTTTTCGCCT CGCTCATCTC GATCCTCTAT TATCTCGGCA TCATGCAGCT GGTGATCAAA
TGGGTCGGCG GCGCGATCCA GAAGGTCACG GGCATCACCA AGGTCGAAAG CCTCGGCGCC
GCGGCGAACA TCTTTGTCGG CCAGTCCGAA TCGCCGCTCG TCATCCGCCC CTATCTCGCA
GGCCTTACCC CCTCACAGCT TTTCACCGTG ATGACGGTCG GCATGGCGGG GGTCGCGGGC
ACCATCCTGG GCGCCTATGC GAGCATGATC GGCGAGCAGC TCCTGCCCTA TCTGCTCGCC
GCGAGCTTCA TGTCGGCACC GGGGGGCATC CTGATGGCCA AGATCATGAT GCCCGACGAT
CCCAGGGATC TGGGCATCGA ACCCGTTATC ATGCCCGAGG CCAGCCATGA CGAGGAAAAG
CCCGCCAACA TCATCATGGC CGCCGCGCAG GGCGCGCAAA CGGGGGTCAA GCTGGCGGTC
GCGGTCGGCG CGATGGTGCT CGCCTTCGTC GCGCTCGTCG CGCTGGCGAA TGGCCTGCTC
GCCGGAATGG GCGGCTGGTT CGGCTATCCC GACCTGTCGT TTCAGGCCGT TATCGGCGCG
ATCTTCCGTC CCGTGATGTG GCTTATGGGC GTACCCTGGG ACGAAAGCGC CGTTGTCGGT
GGCCTGTTCG GCAGCAAGGT CGTGCTCAAC GAGTTCGTCG CCTTCATCGA CCTCGGCAAG
GTGCAGGGCG ATCTGTCGAT GACCGGGGTT GCAATCGCGA CCTTTGCGCT CTGCGGTTTC
GCCAATTTCA GCTCGATCGC GATCCAGATG GCGGTGACCG GCGGCCTCGC CCCCAACCAG
CGCCCGATGA TCGCACGGCT GGGATTGAAG GCGCTGCTGG CCGGCAGCCT GTCGAACCTC
ATGTCGGCCG CGCTTGCCGG GCTGATGATC GCGCTGGTTC CGCCGATCGG ATAA
 
Protein sequence
MERLIGLAGI AALLMIAVLF SSNRRWIRLR VVIPAFLLQA GFAVLVIATP WGRAGIQAMS 
NGVSNLLGYA KAGTDFIFGP LASPEMGANS FAIAALPVIV FFASLISILY YLGIMQLVIK
WVGGAIQKVT GITKVESLGA AANIFVGQSE SPLVIRPYLA GLTPSQLFTV MTVGMAGVAG
TILGAYASMI GEQLLPYLLA ASFMSAPGGI LMAKIMMPDD PRDLGIEPVI MPEASHDEEK
PANIIMAAAQ GAQTGVKLAV AVGAMVLAFV ALVALANGLL AGMGGWFGYP DLSFQAVIGA
IFRPVMWLMG VPWDESAVVG GLFGSKVVLN EFVAFIDLGK VQGDLSMTGV AIATFALCGF
ANFSSIAIQM AVTGGLAPNQ RPMIARLGLK ALLAGSLSNL MSAALAGLMI ALVPPIG