| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_3041 |
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| Symbol | |
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| ID | 4083049 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingopyxis alaskensis RB2256 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008048 |
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| Strand | + |
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| Start bp | 3188443 |
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| End bp | 3191238 |
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| Gene Length | 2796 bp |
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| Protein Length | 931 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 638011427 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_618078 |
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| Protein GI | 103488517 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR01782] TonB-dependent receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.00000614421 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.287923 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCAATTC AAGCAATGCG GAGCGTTCGC ACTTTGACCC GGCTGGCGTG CGGGGCCTCG
CTTGCCGTGC TGGCGGCGTC GCCGGTGTGG GCGCAGGATG CTGCTGAAGA GGCGGTCGCC
AGCGAAGACG AGATCGTCGT CACCGGCTTT CGCGCCTCGC TCGACGAAGC ACTCAACCAG
AAACGCGATT CGATCTCGGC TGTCGACGTC ATCGTGGCGG AGGACATTGC GAAATTCCCG
GATCAGAATC TGGCTGAATC GCTGCAACGC ATTCCCGGCA TCTCCATCCA GCGCGACGCT
GGCGAAGGCC GCGCGATCAC GGTTCGCGGG CTTGGCGCAC AGTTCACGCG CGTTCGCCTG
AACGGCATGG AAACCATCGC GACGTCGACC GACGGCGCCG CGGCGAACCG CGACCGCGCG
TTCGATTTCA ACGTCTTTGC CTCCGAACTC TTCACCTCGC TGGTGGTCCA TAAGACCGCC
TCGGCCTCGC TCGACGAAGG CTCGCTGGGG GCAGTGGTCG ATCTCAACAC CGGCAATCCG
CTGGGCGGCA AGGAAGGGCT GACGCTCGTT GGCTCGGCGC AGGCGCGTTA CAACGACCTC
ACCGAAAATG TCGATCCGCG GCTGGCAGGC CTGATCGCCT GGACCGACGC CGATCGCACC
TTCGGCGTTT CGGCGTCGGT CGCCTGGTCC GATTATACGA CGGACGAACT GGGCAATAAC
AGCGTTCGCT GGGCGCAGGC GCCGTTCCGC AGTGTAGATG GTGTAACTTG CCTTTCGGGC
TCCAGTTTCG TCGCAAATCC CTCGGCCGGC TGTATCGAGG TTGCCGAAGC GTTCCACCCG
CGCATCCCGC GTTACGGCCT GGTGCGGCAT GAACGCGAAC GGCTGGGTGC GACCGCCTCG
ATCCAGTTCG AGCCAAGCGA GAATACGAAG ATTTCGATCG ACGGGCTATA TTCGCGGTTC
AAGGAAGTGC GCGACGAATA TTGGGGCGAA GTGCTGTTGC GCAGCGAAGA GCGCGGCATC
GATGTGTCCA ACTACACGAT CGATGAAGAC AACAATCTGA TCGCGGCGGA TCTCGATAAT
GTGTACATCC GCACCGAACG CTATTCGCGT GAGAGCGAGA CCGAATTCTA CCAATTGTCG
GGGCGCCTGG AACAGCGGCT GACCGACACG TTCAAGATCA ATCTGCTTGG CGGTTTTTCG
AAGTCGCAGG CCGATATCCC GATCGAAACG ACGCTGGCGT TCGACGACCG GGACGGCACC
GGGTATCGCT ATGATTATAC GAACATGAAG TTCCCGGTTC TCAGCTTCGG TCCGGGCATC
GAGGATCCTT CGTCGTTCGT GCTCGCCGAA TTCCGCGATC GCCCGTCGTT CCTGACCAAC
AAGTTCAAGA CGGTGTCGCT CGATTTCGAC TGGGACGTGG CCGACCGGTT CAAGCTGCTT
GGCGGCGGTT TCTATCGTCA GTTCGATTTC GATACGGTCG GCTTCCGCCG CGACAGCACC
TATTGTGCCG CCTTCACCTG CGCGCCCGGT ACCACCGGCC TGCCGGTAAC GGCTGACATT
GCCGAACTGT TCAAGCTGGG CAAAGCGGGG CAGCCATCGG GCAATACCAA CGCCTGGATC
GTGCCAGATC TCGATGCGGG GACGGCGCTG ATCGACCTCT ACAACCGTCC GGCCGTCCTT
CAGCAAGGTG AACAGCGCGC AGTCACCGAA AAAACCTATG GCGGCTGGTT TATGACCGAG
TTCGAAACCG AACTCGCCGG GATGCGGCTG ACCGGTAATG CCGGCGTGCG CTATGCCAAA
ACCGAGCAAT CGTCTTCGGG TTTCACAAGC GGAACATTCG TTACGGTCGA CCGGACCTAT
GACGACTGGT TGCCGTCGTT CAACCTGAAC CTGCATCCGA CCGAGAACAT CATTCTGCGC
GGGGCGATCG CGAAGGTGAT CACGCGCCCC ACGCTCGGCA ATCTGTCGCC GGGCGGTGCC
GTCGATCAGT TTAATTTCCG GATCACCTCG GGTAACCCGT TCCTCGATCC GTTCCGCGCG
ACGACTTTCG ATCTGGCCGC CGAATGGTAT TTCGCACCGG GAGCACTCGC TTCGGTGGCT
TTGTTCGCCA AGGATATCGA AAGCTTCCCC ATTTCTACTT CACTTCAGGG GACATATGCC
GACAGCGGCC TGCCGCTCTC GCTTCTGACG CCGGGAACCC CGGCTTATGA TGCTGTCGTG
GGCGGTTCGA ACCCCAACCG GCAGTTCGAG TTCCGTACGA CCGGAAACGG CCCCGGCGCG
AGCCTCAAGG GCATGGAATT GTCGCTCCAG CTACCATTCT CTGTGTTCTC GGACTCGTTG
CGTCACTTTG GCGTGCTCGG CAATGCGACG TTCGTAAAAA GCAATGTCGA CTACACGATT
GCCGGGCCCT TGGCATATGA TCCTGTCGAT AACCGGCTCG AGGCACAGCC AGCGGGCGTC
TATACCCAGC CGCTGCTCAA CCTTGCCAAG CGGGCGTGGA ATGCCACCGT CTATTACGAC
GACGGCAAAT TCTCGGCGCG TACGTCGGCG GCATGGCGCA GCGGCTATAA TGACGGCACC
AGCGGCAACG GCAATGTGTT CGAAGGTTAT GGCAGTTCGT TCAACGTCGA TGCGTCGATC
CGTTATGCGA TCACCGAAAA TATCGAACTG TCGATCGAGG GGACGAACCT TACGGACGAT
TATCGCTATC GCTTCACCGA CCTCGAAGCG AATCGCAACT ATGAGAACAA CCACTACGGC
CGCACCTTCC TGTTCGGTGC GCGCGTCAAG ATCTGA
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| Protein sequence | MSIQAMRSVR TLTRLACGAS LAVLAASPVW AQDAAEEAVA SEDEIVVTGF RASLDEALNQ
KRDSISAVDV IVAEDIAKFP DQNLAESLQR IPGISIQRDA GEGRAITVRG LGAQFTRVRL
NGMETIATST DGAAANRDRA FDFNVFASEL FTSLVVHKTA SASLDEGSLG AVVDLNTGNP
LGGKEGLTLV GSAQARYNDL TENVDPRLAG LIAWTDADRT FGVSASVAWS DYTTDELGNN
SVRWAQAPFR SVDGVTCLSG SSFVANPSAG CIEVAEAFHP RIPRYGLVRH ERERLGATAS
IQFEPSENTK ISIDGLYSRF KEVRDEYWGE VLLRSEERGI DVSNYTIDED NNLIAADLDN
VYIRTERYSR ESETEFYQLS GRLEQRLTDT FKINLLGGFS KSQADIPIET TLAFDDRDGT
GYRYDYTNMK FPVLSFGPGI EDPSSFVLAE FRDRPSFLTN KFKTVSLDFD WDVADRFKLL
GGGFYRQFDF DTVGFRRDST YCAAFTCAPG TTGLPVTADI AELFKLGKAG QPSGNTNAWI
VPDLDAGTAL IDLYNRPAVL QQGEQRAVTE KTYGGWFMTE FETELAGMRL TGNAGVRYAK
TEQSSSGFTS GTFVTVDRTY DDWLPSFNLN LHPTENIILR GAIAKVITRP TLGNLSPGGA
VDQFNFRITS GNPFLDPFRA TTFDLAAEWY FAPGALASVA LFAKDIESFP ISTSLQGTYA
DSGLPLSLLT PGTPAYDAVV GGSNPNRQFE FRTTGNGPGA SLKGMELSLQ LPFSVFSDSL
RHFGVLGNAT FVKSNVDYTI AGPLAYDPVD NRLEAQPAGV YTQPLLNLAK RAWNATVYYD
DGKFSARTSA AWRSGYNDGT SGNGNVFEGY GSSFNVDASI RYAITENIEL SIEGTNLTDD
YRYRFTDLEA NRNYENNHYG RTFLFGARVK I
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