| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_2759 |
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| Symbol | |
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| ID | 4080244 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingopyxis alaskensis RB2256 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008048 |
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| Strand | - |
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| Start bp | 2908033 |
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| End bp | 2909298 |
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| Gene Length | 1266 bp |
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| Protein Length | 421 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 638011142 |
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| Product | Type I secretion membrane fusion protein, HlyD |
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| Protein accession | YP_617797 |
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| Protein GI | 103488236 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.246245 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.864922 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCAGGC GAATCGTCAC ATTCTGGCAG CGCCTGCGCG GAAGCGAACA GATCATGGTG
GCGGCCGCCG TCGGCCTGGT GCTGTTTCTG TTGTGGGCGA GCATCGCGCG CGTCGACGAA
ATATCGCGCG GGCAGGGCCG CGTCATCCCC TCTTCACGGG TGCAGATCAT CCAGTCGGCC
GAACCGTCGA CGATCCGTGA AATCCTCGTC CGGTCGGGCC AGACGGTGGA GAAGGGGCAA
TTGCTCGTGC GGCTCGACAA TACGACGTCG CAGTCCGAAC TGGGGCAGCT CGAAACCGAG
AACGAACGCC TTGCGCAGCG CGCAGCGCGC CTCGCGGGCG AGGGGGGAAG CGGTGCGGGC
TGCACGGGCG ACAGTTGCGG CGACGAAGCG CGGCTGGCCG AAGTGCGGCG TTCGGCGCTG
CAAAGCCAGC TCGCCGCGCT CTCGGCCAGC GTCGAACAAC GCCGCCGCGA CCTGGGCGAA
GCGCAGGCGA CGGCAAGCGC GCTCGAAAGC AGCCTGCGGC TCGCGCGCGA ACAGGTGGCG
ATGCTCGAAC CGCTCGCGGC GCGCGGCGTC GTGCCGCAGA CCGAACTGCT CACCGCACAG
CGCGAGGTCG TCGATATTCA GGGCCGCCTC GCCGCCGCGC GCCAGGCGAT GTCGCGCTCG
CAGGCGGCGA TCCGCGAAGC GAGTGCCGAG GTATCGCGCG CGCGGTTCGA CTTCCAGCAG
GAAGCGCTCA ACGAACGCAG CCAGCTCACC ACCAAGATGG CGGTCAACGA AGAAACGATC
CGCGGCGCCG AGGGGCGGCT GGCGCGCTCG GAGATCCGCT CGCCGGCGCG CGGCGTCGTC
AACGATCTGC TCGTCAACAC GCTGGGCGGC TTCGTCAATG CCGGCGAACA GATCATGCAG
ATCGTGCCGC TCGGCGACAA ATTGCTCATC GAAACGCGCG TCACGCCGCG CGACATCGCC
TTCATCAAGG TCGGCGACCC GGCGAACGTC AAGGTCACCG CCTATGATTT TTCGATCTAT
GGCGGGCTGA AGGGCAAGGT CGTGCGCGTG TCGCCCGACA GCATCTATGA CGAGGTGGAG
CGCGAAGCCT ATTTCACCGT CGTCGTCGAA ACGACGAACA GCTTTCTCGT ATCGAACGGC
CGACGCCTGC CGATCACTCC TGGGATGCTA TGCGATGTCG AAATCCTGAC GGGCAAGAAA
TCGGTGCTCA GCTATTTGCT CAAACCCGTT TTGAAGGTCA GCGGGACGGC CTTGACCGAA
CGCTGA
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| Protein sequence | MIRRIVTFWQ RLRGSEQIMV AAAVGLVLFL LWASIARVDE ISRGQGRVIP SSRVQIIQSA
EPSTIREILV RSGQTVEKGQ LLVRLDNTTS QSELGQLETE NERLAQRAAR LAGEGGSGAG
CTGDSCGDEA RLAEVRRSAL QSQLAALSAS VEQRRRDLGE AQATASALES SLRLAREQVA
MLEPLAARGV VPQTELLTAQ REVVDIQGRL AAARQAMSRS QAAIREASAE VSRARFDFQQ
EALNERSQLT TKMAVNEETI RGAEGRLARS EIRSPARGVV NDLLVNTLGG FVNAGEQIMQ
IVPLGDKLLI ETRVTPRDIA FIKVGDPANV KVTAYDFSIY GGLKGKVVRV SPDSIYDEVE
REAYFTVVVE TTNSFLVSNG RRLPITPGML CDVEILTGKK SVLSYLLKPV LKVSGTALTE
R
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