Gene Sala_2583 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSala_2583 
Symbol 
ID4081636 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingopyxis alaskensis RB2256 
KingdomBacteria 
Replicon accessionNC_008048 
Strand
Start bp2726304 
End bp2727797 
Gene Length1494 bp 
Protein Length497 aa 
Translation table11 
GC content65% 
IMG OID638010960 
ProductType I secretion outer membrane protein, TolC 
Protein accessionYP_617622 
Protein GI103488061 
COG category[M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG1538] Outer membrane protein 
TIGRFAM ID[TIGR01844] type I secretion outer membrane protein, TolC family 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.655757 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCAATC GCTTCCCGAC ATGGATCTTT GCCGTACTGC CCTTGCTCGC GAGCAGCGCC 
GCCCATGGCG AGACCTTGCG GCAGGCATTG ATCTATGCCT ATCGCACCAA CCCGAGCCTG
ACGGCGGCAA GGGCAGGCCT CCGGGCGACC GATGAAGGCG TGCCCATCGC CAAGGCCGCC
GGACGCCCGA CACTGAGCGC GACCGCTGAC TATCAGGAAT TTGTTGTGCG ATCCGCCAAC
AGTTTCTCCG CTCCCTTGCG GGCGGCTAAT GCAAACGCGA ACCTGTCGTT TCCCCTCTAC
CAGGGCGGCC GCGTCAAGAA TTCGATTCGC GCCGCCGATG CCCGCGTGGA ATCCGGGCGG
GCGAATTTGC GCTTCACGGA AGCCGATGTC TTCACGGCCA TCGTCTCGGT CTACATGGAT
GTCATGCGTG ACGACGCGAT CGTCGGACTC AACCGCCAGA ACGTCGCCGT CCTCGAGACG
AACCTCCAGG CTTCACGAGA CCGCTTCGAA GTGGGAGACC TGACCCGTAC CGATGTCGCC
CAGTCCGAGG CGCGTCTCGC AGTGGCGCGA GGGCAGCTGG AGACGGCGCT GGCGCAGCTC
GACACCAGCC TTGAGAATTA TCTCCGCTTC GTCGGTTTGC CGGCGCGCGA TCTCGAGCAG
CCGCCGGCGT TGCCAGGCCT ACCCAAGTCG CCCGCCGAGG CTGTGGCGAT TGCCATCGAG
AACAACCCTC AGCTCCTCGC AGCCAAGGCC GATGCGAGAG CCGCACGCTA CGACGTCCGC
GTGGCGGGCG CATCGCGCCT GCCTACGCTC TCGGTGGTGG GCAATGGCGG CTATAACAAT
TATCTGGGCA CGCTCACCAG CACTCTTCCG GGGCGCGTGT TCCAGCAGGC GCAGACCACG
GCGACGGTCG GACTATCCGC AACGATCCCG CTTTACCAGG GCGGCCTCCC TGCGGCGCAA
GTGCGACGCG CCACCGCGAT CGAGAGCCAG GCGCTCGAGC AGATCATATT CATCGAGCGC
CGCGTCGTCG CGGAAGCGCG CGCCGCCTAT TCGCGCTATC AGGCGACCCA GGCCGTGATC
CAATCATCGA AAGCGGCGAT CGCGGCAAAT GAGCTGGCCC TCGAAGGTGT ACGGGCCGAG
AACAGCGTTG GCACACGCAA TGTCCTCGAC GTGCTCAACG CCGAACAGGA GCTTCTCAAC
AGCCGCGTGC AGCTCGTGAC CGCCGAGCGC GACGCCTATG TCGCAGGCTT CACGCTTCTC
GCGGCAATGG GCCGAGCCGA AGCGCGCGAT CTCAACCTCT TTGGCGGCAC GTTGTTTGAG
CCGGGCTTCA GCCGCAAGGC GCCGTCCGGC CGCCTGCCCT CCGAAATGGA TTTCGATTCT
GCTCCTGACA GCAACATCGA ATTTGTCCCG GCGACACCAG TTCAATTCCT CGAAGGGGGT
ATGCGGCCGG CGCCACGGGA GCCGCTCGCA TCCAATACGG GAGCCAGACC ATGA
 
Protein sequence
MSNRFPTWIF AVLPLLASSA AHGETLRQAL IYAYRTNPSL TAARAGLRAT DEGVPIAKAA 
GRPTLSATAD YQEFVVRSAN SFSAPLRAAN ANANLSFPLY QGGRVKNSIR AADARVESGR
ANLRFTEADV FTAIVSVYMD VMRDDAIVGL NRQNVAVLET NLQASRDRFE VGDLTRTDVA
QSEARLAVAR GQLETALAQL DTSLENYLRF VGLPARDLEQ PPALPGLPKS PAEAVAIAIE
NNPQLLAAKA DARAARYDVR VAGASRLPTL SVVGNGGYNN YLGTLTSTLP GRVFQQAQTT
ATVGLSATIP LYQGGLPAAQ VRRATAIESQ ALEQIIFIER RVVAEARAAY SRYQATQAVI
QSSKAAIAAN ELALEGVRAE NSVGTRNVLD VLNAEQELLN SRVQLVTAER DAYVAGFTLL
AAMGRAEARD LNLFGGTLFE PGFSRKAPSG RLPSEMDFDS APDSNIEFVP ATPVQFLEGG
MRPAPREPLA SNTGARP