Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sala_2583 |
Symbol | |
ID | 4081636 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingopyxis alaskensis RB2256 |
Kingdom | Bacteria |
Replicon accession | NC_008048 |
Strand | + |
Start bp | 2726304 |
End bp | 2727797 |
Gene Length | 1494 bp |
Protein Length | 497 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 638010960 |
Product | Type I secretion outer membrane protein, TolC |
Protein accession | YP_617622 |
Protein GI | 103488061 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.655757 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCAATC GCTTCCCGAC ATGGATCTTT GCCGTACTGC CCTTGCTCGC GAGCAGCGCC GCCCATGGCG AGACCTTGCG GCAGGCATTG ATCTATGCCT ATCGCACCAA CCCGAGCCTG ACGGCGGCAA GGGCAGGCCT CCGGGCGACC GATGAAGGCG TGCCCATCGC CAAGGCCGCC GGACGCCCGA CACTGAGCGC GACCGCTGAC TATCAGGAAT TTGTTGTGCG ATCCGCCAAC AGTTTCTCCG CTCCCTTGCG GGCGGCTAAT GCAAACGCGA ACCTGTCGTT TCCCCTCTAC CAGGGCGGCC GCGTCAAGAA TTCGATTCGC GCCGCCGATG CCCGCGTGGA ATCCGGGCGG GCGAATTTGC GCTTCACGGA AGCCGATGTC TTCACGGCCA TCGTCTCGGT CTACATGGAT GTCATGCGTG ACGACGCGAT CGTCGGACTC AACCGCCAGA ACGTCGCCGT CCTCGAGACG AACCTCCAGG CTTCACGAGA CCGCTTCGAA GTGGGAGACC TGACCCGTAC CGATGTCGCC CAGTCCGAGG CGCGTCTCGC AGTGGCGCGA GGGCAGCTGG AGACGGCGCT GGCGCAGCTC GACACCAGCC TTGAGAATTA TCTCCGCTTC GTCGGTTTGC CGGCGCGCGA TCTCGAGCAG CCGCCGGCGT TGCCAGGCCT ACCCAAGTCG CCCGCCGAGG CTGTGGCGAT TGCCATCGAG AACAACCCTC AGCTCCTCGC AGCCAAGGCC GATGCGAGAG CCGCACGCTA CGACGTCCGC GTGGCGGGCG CATCGCGCCT GCCTACGCTC TCGGTGGTGG GCAATGGCGG CTATAACAAT TATCTGGGCA CGCTCACCAG CACTCTTCCG GGGCGCGTGT TCCAGCAGGC GCAGACCACG GCGACGGTCG GACTATCCGC AACGATCCCG CTTTACCAGG GCGGCCTCCC TGCGGCGCAA GTGCGACGCG CCACCGCGAT CGAGAGCCAG GCGCTCGAGC AGATCATATT CATCGAGCGC CGCGTCGTCG CGGAAGCGCG CGCCGCCTAT TCGCGCTATC AGGCGACCCA GGCCGTGATC CAATCATCGA AAGCGGCGAT CGCGGCAAAT GAGCTGGCCC TCGAAGGTGT ACGGGCCGAG AACAGCGTTG GCACACGCAA TGTCCTCGAC GTGCTCAACG CCGAACAGGA GCTTCTCAAC AGCCGCGTGC AGCTCGTGAC CGCCGAGCGC GACGCCTATG TCGCAGGCTT CACGCTTCTC GCGGCAATGG GCCGAGCCGA AGCGCGCGAT CTCAACCTCT TTGGCGGCAC GTTGTTTGAG CCGGGCTTCA GCCGCAAGGC GCCGTCCGGC CGCCTGCCCT CCGAAATGGA TTTCGATTCT GCTCCTGACA GCAACATCGA ATTTGTCCCG GCGACACCAG TTCAATTCCT CGAAGGGGGT ATGCGGCCGG CGCCACGGGA GCCGCTCGCA TCCAATACGG GAGCCAGACC ATGA
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Protein sequence | MSNRFPTWIF AVLPLLASSA AHGETLRQAL IYAYRTNPSL TAARAGLRAT DEGVPIAKAA GRPTLSATAD YQEFVVRSAN SFSAPLRAAN ANANLSFPLY QGGRVKNSIR AADARVESGR ANLRFTEADV FTAIVSVYMD VMRDDAIVGL NRQNVAVLET NLQASRDRFE VGDLTRTDVA QSEARLAVAR GQLETALAQL DTSLENYLRF VGLPARDLEQ PPALPGLPKS PAEAVAIAIE NNPQLLAAKA DARAARYDVR VAGASRLPTL SVVGNGGYNN YLGTLTSTLP GRVFQQAQTT ATVGLSATIP LYQGGLPAAQ VRRATAIESQ ALEQIIFIER RVVAEARAAY SRYQATQAVI QSSKAAIAAN ELALEGVRAE NSVGTRNVLD VLNAEQELLN SRVQLVTAER DAYVAGFTLL AAMGRAEARD LNLFGGTLFE PGFSRKAPSG RLPSEMDFDS APDSNIEFVP ATPVQFLEGG MRPAPREPLA SNTGARP
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