| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_2485 |
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| Symbol | |
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| ID | 4081361 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingopyxis alaskensis RB2256 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008048 |
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| Strand | - |
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| Start bp | 2624008 |
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| End bp | 2624991 |
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| Gene Length | 984 bp |
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| Protein Length | 327 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 638010863 |
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| Product | type II secretion system protein E |
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| Protein accession | YP_617525 |
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| Protein GI | 103487964 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4962] Flp pilus assembly protein, ATPase CpaF |
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| TIGRFAM ID | [TIGR02782] P-type conjugative transfer ATPase TrbB |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.3274 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGCGCAG AACCGATCCG GCTGGAGGCA CGTCATCGCA GCGCACGCAT GCTGCGCACG
GCGATGGGCG GCGCGATCGC CGAGTGGCTC TCCGACCGCG AAATCATCGA GATCATGCTC
AACCCCGACG GGCGGCTCTG GGTCGATAGG CTTGGCCTCG GGATCGAGGA CAGCGGCGAG
ACGCTGAGCG CGGCCGATGG CGAACGCATT ATCCGCCTTG TCGCGCATCA CGTCGGCGCC
GAGGTCCACG GGGCTGCACC GCGCGTGTCC GCCGAGCTTC CCGATGGCGG CGAGCGCTTC
GAGGGATTGC TGCCGCCCGT CGTCGCCGCG CCGACATTCG CCATCAGAAA ACCGGCTATC
GCGGTCTTCA CGCTCGCCGA CTATGTCGCC GCGGGCATCA TGTCGTCCGA GGCCGCGGAC
ATCCTTCGCG TCGGCGTGCG CGAGCGTCTG AACATCCTCG TCGCCGGCGG CACGGGCACC
GGCAAGACCA CGCTGACCAA CGCGCTCCTC GCTGAGATTG CGGGCAGCAG CGACCGCATC
GTGCTGATCG AGGATACGCG CGAATTGCAG TGCGCGGCGC CGAACCTCGT CGCAATGCGC
ACTAAGGATG GTGTCGCCTC GCTCTCCGAC CTCGTGCGCT CCTCGCTCCG CCTCCGGCCC
GATCGCATTC CGATCGGCGA GGTTCGCGGC GCCGAGGCGC TCGATCTTCT GAAGGCATGG
GGCACCGGTC ATCCGGGCGG TGTGGGCACG ATCCACGCGG GTAGTGCGCT CGGCGCGCTC
CGCCGGATGG AGCAGCTCAT CCAGGAAGCG GTGATCACCG TCCCGCGCGC GTTGCTCGCC
GAGACGATCG ATCTCGTCGC CGTGCTCGTC CGCGACGGTA GTGGCCGGCG CCTTGCCGAA
CTCGCACGCG TCGACGGCTT CGACCGGCTG AACCTCGAAT ATCGCCTCAC GCCCCTCATC
ACCCCCGAAG GAGACAATCG ATGA
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| Protein sequence | MGAEPIRLEA RHRSARMLRT AMGGAIAEWL SDREIIEIML NPDGRLWVDR LGLGIEDSGE
TLSAADGERI IRLVAHHVGA EVHGAAPRVS AELPDGGERF EGLLPPVVAA PTFAIRKPAI
AVFTLADYVA AGIMSSEAAD ILRVGVRERL NILVAGGTGT GKTTLTNALL AEIAGSSDRI
VLIEDTRELQ CAAPNLVAMR TKDGVASLSD LVRSSLRLRP DRIPIGEVRG AEALDLLKAW
GTGHPGGVGT IHAGSALGAL RRMEQLIQEA VITVPRALLA ETIDLVAVLV RDGSGRRLAE
LARVDGFDRL NLEYRLTPLI TPEGDNR
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