| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_2417 |
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| Symbol | |
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| ID | 4080855 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingopyxis alaskensis RB2256 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008048 |
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| Strand | - |
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| Start bp | 2554011 |
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| End bp | 2556482 |
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| Gene Length | 2472 bp |
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| Protein Length | 823 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 638010796 |
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| Product | TonB-dependent receptor, plug |
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| Protein accession | YP_617458 |
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| Protein GI | 103487897 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.599491 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGAAAT TGCTTCGCAC GAGTGGCTCG ATTATCGCCG TCCTGGCAGG CATGTCGGCC
GCCGCCGCCT TCGCGCAGGA TAACGCCAAA GAGGCGCCGG GGCCAGGCGC GTCGCAGGGC
GAAATCGTCG TGACGGGTAC GCGGCGGAAC GATCTCAAGG CGGCCGATTC CGCTCAGCCG
ATCGACATCA TCACCGGTGC CGAACTGCTC GAAAAGGGCA CGGCCGACAT GAATGATCTC
CTGCGCACCG AGGTCCCGTC GCTCAATGTC CAGCGCCTCG TCAGCAACGA CGGCGCCGTT
TTTACCCGGC CTTTCTCGCT GCGCGGCCTG CCGCCGGACC AGACGCTGGT GCTCGTGAAT
GGCAAGCGGC GCCATCGCGG CGCGACGGTC CAGTTCACCA ATGTTCCCTA TATCCGGGGA
TCGCAGGGAC CCGATCTTTC GGCGATCCCG TCGATCGCGA TCGGCCAGCT CGAGGTTCTG
CGTGACGGCG CGTCGGCGCT CTATGGATCG GATGCGATCG CCGGCGTCCT CAATTTCGGT
CTGCGCCGCG ACCGCGAAGG CGGATTGCTG ATCGCCCGCT ATGGCCAATT CTATAAGGGC
GACGGCGAGG ATTTCCTCGT CCAGGGCAAT GTCGGGCTTC CCTTCACCGA CGCCGGTTTC
GTCAACATCA GCGGCGAATA TGTGAACGCC AGCACGACGT CGCGCGGCAT TCAGCGTCCC
GACGCGCAGG CGCTCATCGA TGCCGGCGTT CAGGATGTCC CGGTCCCGGC GCAGCGCTGG
GGAAATCCCG AATCCGAGGC GGCGCGCATC TTCGTCAATG CCGGCATCGA ACTGTCGGAG
GAGATGGAAT TCTACACCTT CGGCAACTAT AGCTGGAGCC GCGGCACGAC GGCCTTCTTT
TACCGCAACC CCGATGCCAG CTTCATTTCC ACCTCGATTC CGCTCACCAA TACGCCCGGA
GGACAGCGGT TCAGCTTCCG CCAGCTCTTT CCCGGCGGTT TCACCCCGGA TTTCGGTGCC
ACGGTGACCG ATGCGGCGCT GGCGGCCGGC CTCAAGGGCG AATTCTCCTC GGGCCTGACC
TATGACCTCA GCGCTTCCTA TGGTCAGAAC CATGCTTCCT ACCGGATCGA AAATACGGTC
AATCCGTCGC TTGGCCTCGC GTCGCCGACC TCCTTCAAGC CGGGGCAGCT CGAGCAGCGC
GAACTCGCTT TCAATCTCGA TCTCACTTAC CCCATCGCGA TCGGCACCTC CGATCCGCTG
ACGCTTGCAG GCGGTCTCGA GTATCGGCGC GAGACATATG AGATCACGGC CGGCGACATC
GCATCATGGC AGGTTGGTCC TTTCGCGTCG GTCATCGATC CCGATACCGG AAACCGCGTC
GGACTGCCGG TCGGCTCGAA CGGCTTCCCG GGCTTCAGTC CCATCCAGGC GGGCGAGTTC
GCGCGCAGCA ACTGGGCCGC CTATACGTCG CTCGAAGGCA ATCTCACCGA CGCGCTCCAG
TTCGGCCTTG CCGGCCGCTA CGAGAATTAC TCGGACTTCG GCTCGAAATT CACCTGGAAG
ATCAACGGGC GATATGATTT CTCGGACGTC TTCGCGGTGC GCGGATCGGT CAACACCGGC
TTTCGGGCGC CGACGCCGGG CCAGTCGAAC GCCTCGCAGG TCCAGACCAA CATCGACTCG
ATAACCGGGG CGCCGCTGAC CGCAGGCATT ATCGCGCCCA ACAATCCGGT GGCGCAATTC
TTCGGCGCGA CGCCGCTTCG GCCCGAGAAT TCGTTCAACG TCGCCGGCGG CATCGTGGTG
AAGCCCTCCA ATCGCATCAC CTTCACGCTC GACTATTTCA ACATCAAGGT CGAAGACCGG
ATCGCCGTAT CGGGCAATTT CAATCTCACC CCGGCGCAGC GTGCGCAGCT CGCGGCGCTT
GGCATTCCCG GTGGGGATTC CTTCCAGCAG GTGAGCTTCT TCACCAATTC CTTCGACAGC
CGCACCCAGG GCGTCGATGC GGTGCTCACC GTGGGCTTCG ACCTCGGCGA CGGCAAGGCC
ACGCTCGGCC TCAACGGCAA CTATACCAAA ACCGATGTCA TCAAGGCCTC GCCGGTGATC
ACTGCGGACC GCGAGCGGCT GCTCGAACTC GAGGGCTTCG TTCCGAAGTG GAAGGGCAAT
GCGTCCTTCA CTTATGCGGG CGAGCGCTTC GGCTTCGTCG CGCGCGCGAA CTATTATGGC
AAATGGACCG ACTATGGCGC CGCACCGGCT GCCGACCAGA CGGGCGGCGC CGAACTGCTG
GTCGATCTCG AGCTGTCCTA CAAGGTTAGC GACATGCTCA AGCTCGCGGT CGGCGGCGAG
AATATCTTCG ACAATTACCC CGACGTCGAG GCGCGGCAAT CCCAGATCAA CAACGGGATC
CGATATCTCC GCTTCGCGCC GACGGGGTTC AACGGGGGCT TCTGGTACGT CCGCGCGACC
GCCTCCTTCT GA
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| Protein sequence | MKKLLRTSGS IIAVLAGMSA AAAFAQDNAK EAPGPGASQG EIVVTGTRRN DLKAADSAQP
IDIITGAELL EKGTADMNDL LRTEVPSLNV QRLVSNDGAV FTRPFSLRGL PPDQTLVLVN
GKRRHRGATV QFTNVPYIRG SQGPDLSAIP SIAIGQLEVL RDGASALYGS DAIAGVLNFG
LRRDREGGLL IARYGQFYKG DGEDFLVQGN VGLPFTDAGF VNISGEYVNA STTSRGIQRP
DAQALIDAGV QDVPVPAQRW GNPESEAARI FVNAGIELSE EMEFYTFGNY SWSRGTTAFF
YRNPDASFIS TSIPLTNTPG GQRFSFRQLF PGGFTPDFGA TVTDAALAAG LKGEFSSGLT
YDLSASYGQN HASYRIENTV NPSLGLASPT SFKPGQLEQR ELAFNLDLTY PIAIGTSDPL
TLAGGLEYRR ETYEITAGDI ASWQVGPFAS VIDPDTGNRV GLPVGSNGFP GFSPIQAGEF
ARSNWAAYTS LEGNLTDALQ FGLAGRYENY SDFGSKFTWK INGRYDFSDV FAVRGSVNTG
FRAPTPGQSN ASQVQTNIDS ITGAPLTAGI IAPNNPVAQF FGATPLRPEN SFNVAGGIVV
KPSNRITFTL DYFNIKVEDR IAVSGNFNLT PAQRAQLAAL GIPGGDSFQQ VSFFTNSFDS
RTQGVDAVLT VGFDLGDGKA TLGLNGNYTK TDVIKASPVI TADRERLLEL EGFVPKWKGN
ASFTYAGERF GFVARANYYG KWTDYGAAPA ADQTGGAELL VDLELSYKVS DMLKLAVGGE
NIFDNYPDVE ARQSQINNGI RYLRFAPTGF NGGFWYVRAT ASF
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