| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_2262 |
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| Symbol | |
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| ID | 4080566 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingopyxis alaskensis RB2256 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008048 |
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| Strand | + |
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| Start bp | 2380376 |
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| End bp | 2381869 |
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| Gene Length | 1494 bp |
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| Protein Length | 497 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 638010641 |
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| Product | Type I secretion outer membrane protein, TolC |
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| Protein accession | YP_617304 |
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| Protein GI | 103487743 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0148702 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.873765 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGATA GCGACAAGAA ACCGTGCCCT CGTCGTGCCC GCTGGCTTGC CGGCCTCGCC
GCCAGCGCGC TGATGCTGCC GATGGCGGCC GAGGCCGAAA CCCTCCAGGG GGCACTCGCC
AAGGCCTATG AAAACAATCC GACGCTGACC GGCGCGCGCG CGGGCCAGCG CGCCGCCGAC
GAAAATGTGC CGATCGAAAA AAGCCGCGGC CTGCCCGAAG TCGGCACGCA GGCGAGTTAT
GAAGAAAATC TGATCATCCC CGGCAATGCG TTCAACTCGC CCGCGCGATC ATTGACGGCA
GGCGCGCGGC TGACCGTTCC GATCTATCAG GGCGGCGCGG TGCGCAACGC GGTGCGCGCG
GCGAAATATC GCGTCGAGGC GGGGCAGGCC AATCTGCGCG CGACCGAGGC GAGCATCTTT
TCGCAGGTGG TCGGCGCCTA TATGGACGTC ATCCGCGACC AGGCGATCGT CCAGCTCAAC
CAGAAAAATG TCGCGGTGCT GCGCACCAAT TTACAGGCGA CGAGCGACCG CTTCGAAATC
GGCGACCTCA CCCGCACCGA CGTCGCCCAG TCGGAGGCGC GCCTCGCGCT CGCCGAGGGC
GACCTCAGGA CCGCCGAAGC CAATCTGATC GCCAGCCGCG AAGCCTATAT CCGGCTCGTC
GGCGAAGCGC CGGTCGATCT CGAGCCGCCG CCGCCGCTGC CCAACCTGCC CGCCACCGCC
GAGGAAGCTG TCGCGATCGC GCTGGACAAC AACCCCGACA TCGAGGCCGC GGACCAGCAG
GTCAAGGCGT CGCGCGCCGA CATCGGCACC GCCAAGTCGA GCCGCGCGCC CAGGGTGTCG
GCGATCCTCA GCGGCGGTTA CAATAATTTC CTCGGTTCGC TGAACAGCGG CGTTCCCGGC
GTCAGCGTGA CGCAGGAAAC GTCGAGCGCC GCGGCGGGGG TCGAGGTCAC GCTGCCGATC
TTCACCGCCG GCCGCCGTTC GGCGCAGGTC CGGCAGGCGC AATCGCGCAG CAGCCAGGCG
ATCGAACAAT ATGTCGAGGT CGAACGCGGC GTGATCGCCC AGACGCGCGG CGCCTATGCC
GCATGGCAGG CGAACGAGCG CATCATCGCC GCGACGCGGC AGGCGGTCGG CGCGAACGCG
CTTTCGCTCG AGGGGGTGCG CGCCGAAAAC AGCGTCGGCA CGCGCTCAAT CCTCGACATA
TTGAACGCCG AGCAGGAATA TCTGAACACG CAGGTCCAGC TTGTTTCGGC GCAGCGCAAC
AGCTACGTCG CCGCTTTCTC GCTCCTCGCC GCGATGGGCA AGGCCGAGGC GCGCGATCTG
GGGATCGAGG GCGGCGCGCT CTACGACCCC GAGGTCAATT ACCGCCGCGT GAAGGGGCAG
CTGTGGGACT GGGCAGACGA TCCGGCGCCG CAACAGGTCG CAACCGACAC GCGCGCCGTC
CCGCCCGCCG ACGCCGCCAT CCCCGAAGGG CCGCCCGCGC CCACGCCACA ATAA
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| Protein sequence | MTDSDKKPCP RRARWLAGLA ASALMLPMAA EAETLQGALA KAYENNPTLT GARAGQRAAD
ENVPIEKSRG LPEVGTQASY EENLIIPGNA FNSPARSLTA GARLTVPIYQ GGAVRNAVRA
AKYRVEAGQA NLRATEASIF SQVVGAYMDV IRDQAIVQLN QKNVAVLRTN LQATSDRFEI
GDLTRTDVAQ SEARLALAEG DLRTAEANLI ASREAYIRLV GEAPVDLEPP PPLPNLPATA
EEAVAIALDN NPDIEAADQQ VKASRADIGT AKSSRAPRVS AILSGGYNNF LGSLNSGVPG
VSVTQETSSA AAGVEVTLPI FTAGRRSAQV RQAQSRSSQA IEQYVEVERG VIAQTRGAYA
AWQANERIIA ATRQAVGANA LSLEGVRAEN SVGTRSILDI LNAEQEYLNT QVQLVSAQRN
SYVAAFSLLA AMGKAEARDL GIEGGALYDP EVNYRRVKGQ LWDWADDPAP QQVATDTRAV
PPADAAIPEG PPAPTPQ
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