Gene Sala_2216 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSala_2216 
Symbol 
ID4080287 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingopyxis alaskensis RB2256 
KingdomBacteria 
Replicon accessionNC_008048 
Strand
Start bp2327712 
End bp2328158 
Gene Length447 bp 
Protein Length148 aa 
Translation table11 
GC content70% 
IMG OID638010594 
Producthypothetical protein 
Protein accessionYP_617258 
Protein GI103487697 
COG category[U] Intracellular trafficking, secretion, and vesicular transport
[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG1585] Membrane protein implicated in regulation of membrane protease activity 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.00884783 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.106638 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCCGACT GGCTGACCAA TATGGAGCCG CATTGGGCGT GGCTGTCGCT CGGCGTGCTG 
CTTGCCGCCG CCGAAATCGT TGCGCCGGGC TTCTTCCTCA TCTGGATCGG CGCTGCGGCG
ATCGTCACCG GGGTCATCGC CTGGGTTGTG CCGCTCAGCG TCCCTTTCCA GCTCGGCATT
TTTGCCCTGC TGTCCTTCGT CGCGCTCTAT GGCGGGCGCC GCTGGCTCCG GATGAACCCG
ATCACGACGA CCGACCCCCA CCTCAACCAG CGCGGCGGCC GCCTCGTCGG CGAGGTGCTG
ACGGTGACGA AGGCGATCGA GGACGGCCGC GGCCGCGTGC GTGTCGGCGA TGGCGAATGG
CCGGTGCGCG GCCCCGACGC CGCCGAGGGC GCGAAGGTGC GCGTGGTGAG CGCCGACGGC
GGGGTGCTGG TGGTCGAGCT GGCGTAA
 
Protein sequence
MPDWLTNMEP HWAWLSLGVL LAAAEIVAPG FFLIWIGAAA IVTGVIAWVV PLSVPFQLGI 
FALLSFVALY GGRRWLRMNP ITTTDPHLNQ RGGRLVGEVL TVTKAIEDGR GRVRVGDGEW
PVRGPDAAEG AKVRVVSADG GVLVVELA