| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_2102 |
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| Symbol | |
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| ID | 4080077 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingopyxis alaskensis RB2256 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008048 |
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| Strand | + |
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| Start bp | 2209342 |
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| End bp | 2210559 |
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| Gene Length | 1218 bp |
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| Protein Length | 405 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 638010478 |
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| Product | pseudouridine synthase, RluD |
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| Protein accession | YP_617144 |
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| Protein GI | 103487583 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACGCGC GCAAGACGCC GCTCGACGAC GCGGTCATAG GCGAAGAGGA CGACGGCATT
CGCCTCGACC GCTGGTTCAA GCGCCACCGG CCGGGGACGC CGCACGCGCT GCTCGCGCGC
TGGGCACGGT CGGGGCAACT GACGCTCGAC GGCAGGAAGG CCGATGTGTC CGACCGGATC
GCGGTGGGAC AGAGGCTCGT CATGCCTGTG CCGCCGGTCG AAGCCGAGGC GCGACCGGCG
CGCAAGGACC GTCCGCTGAC CGAAGCCGAC GTCGCACTCG CCGAATCGAT GCTGATCCAC
CGCGACGCGA GCGCCATCGT TCTCAACAAG CTGCCCGGCC TCGCGACGCA GGGGGGGACG
AAGACCGAGC ATCATGTCGA CGGACTGCTT GACGCGCTGA AATATGACGC GCCGGTGCGC
CCCAAGCTGG TCCACCGGCT CGACAAGGAT ACGTCCGGCG CGCTGCTGAT CGCGCGCACC
CCGCGCGCCG CGGCCTGGTT CGCCAAGAGC TTTTCGAACC GCAGCGCGAA GAAAACCTAT
TGGGCGATCG TCGTCGGCGT GCCCGACATC GCGCAGGGCG AGATTGACCT GCCGCTCGCC
AAACAGCCGG GGTCGGGGGG CGAAAAGATG CACGTTCACG ACAGCGGCCT TGCCTCGAAA
ACGCGCTATC GCGTGATCGA CCGCGCGGGG AACAGTGCGG CGTGGGTGGA GCTGCAACCG
CTGACGGGCC GTACGCACCA GTTGCGCGTC CATATGGCAG CGATCGGCCA TCCGATCGTC
GGTGACGGCA AATATGGCGG CAAGGGCGCC TTCCTGACCG GGACGATCAG CCGCAAGCTA
CACCTGCACA GCCGGCGGCT GCGCATCGAC CATCCCGACG GCGGCGTGAT CGACGTGAGC
GCCGACGTGC CCGACCATTT CGCCGCGAGC CTCGACGCGC TCGGCTTCGA CCCGCTCCTC
GGCGAGGTCG AGATCGATGA CGACGCCAGG GGACCGCCGC CGAAAGCTTC GGCAAAAGCC
GCTGCCAAGG CGTATGCCAA GCAGATCCGC AAGGCACGGC GCGGCGAACG CCGCGGGCGC
ACCGCAACCA GCAAGCCGAC CGACCATGTC GGCAAGGCCA AACCCAAGGC CAAGGCGAAA
ATCGCCAAGC CGACGGGACG CAAGCCCGCC GCGAAAAAGC CGTCGGCGCA CCCCACGCGA
CCGCGCTCGC ACAGTTGA
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| Protein sequence | MNARKTPLDD AVIGEEDDGI RLDRWFKRHR PGTPHALLAR WARSGQLTLD GRKADVSDRI
AVGQRLVMPV PPVEAEARPA RKDRPLTEAD VALAESMLIH RDASAIVLNK LPGLATQGGT
KTEHHVDGLL DALKYDAPVR PKLVHRLDKD TSGALLIART PRAAAWFAKS FSNRSAKKTY
WAIVVGVPDI AQGEIDLPLA KQPGSGGEKM HVHDSGLASK TRYRVIDRAG NSAAWVELQP
LTGRTHQLRV HMAAIGHPIV GDGKYGGKGA FLTGTISRKL HLHSRRLRID HPDGGVIDVS
ADVPDHFAAS LDALGFDPLL GEVEIDDDAR GPPPKASAKA AAKAYAKQIR KARRGERRGR
TATSKPTDHV GKAKPKAKAK IAKPTGRKPA AKKPSAHPTR PRSHS
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