| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_2091 |
|---|
| Symbol | |
|---|
| ID | 4080065 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingopyxis alaskensis RB2256 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008048 |
|---|
| Strand | + |
|---|
| Start bp | 2196655 |
|---|
| End bp | 2198862 |
|---|
| Gene Length | 2208 bp |
|---|
| Protein Length | 735 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 638010466 |
|---|
| Product | TonB-dependent siderophore receptor |
|---|
| Protein accession | YP_617133 |
|---|
| Protein GI | 103487572 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG4774] Outer membrane receptor for monomeric catechols |
|---|
| TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.761777 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.724468 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGCATGGCC GTCCTCTCGC CACCCATTTT TTTCGCACAA TCGCGCAACA GTGTTGCAAT
TCGCTCGCAT TAGCGTTAGC GGCGCCGCGA CGATCAGCGA ATCCAACAGG GGGCCATGTG
AAGAAACTGT TTTTGCTTAC CGCTGCCGCG GCGACCTTTC CGGCGACGGC GGTCGCCAGC
GAGGCCGAGC GCGAGGATGC GCGCACCATT TTGGTGATCG GCAAGTCGGA TGGCTATGTC
GCCACCAATT CGGTCACCGC GACCAAGACC GACACACCGC TGATCGATGT GCCACAGACG
ATTTCGGTGG TCACGCGCGA GCGGCTGGAC GATCAGGCGT CGCGTTCGAT CGCCGACGTC
CTGCGCTATG TCCCCGGTAC CACCATCGGC CAGGGCGAGG GCAATCGCGA CCAGATCACC
CTGCGCGGCC AGAACACGAC CGCCGACTTC TTTCTCGACG GGGTGCGCGA CGACGTCCAG
TATTTCCGCA GCCTGTATAA CATCGAGCGG GTCGAGATAC TGAAAGGCCC CTTTGCGATG
ATCTTTGGCC GCGGCGGCAG CGGCGGCGTC ATCAACCGGG TTCAGAAGAC GCCATCGGCC
GATGCGCTGG CAGTTGGCGG CACGGTCAGC GCCAACAGCT TCGGCGCCTG GGACGTTTCG
GCGGATGTCA ATGCGCCCCT TGGTGGCGGT GCGGCGTTCC GGCTCAACGC AAATTACGAG
AGCCTCGACA ATCATCGCGA TTTCTTTGAA GGCGAACGTT ATGCCATCAA TCCCTATGTC
GCGGCCGATC TGGGCCGCTG GAAGCTCGGA CTGTCCTACG AATATGTGAA CGACGACCGC
GTGACCGACC GCGGGGTGCC GTCGATCGCG ACCGCGCCCG GACGGCCGAA CCGTCCGATC
ACGGGCTATC GCGACACTTT CTTTGGTGTG CCGGGCGTCA ATCGCACGGG GCTGGAGGCC
CATATCGTCA AGGCGCGGAT CGACGGCGAG CTGGCGGAGG CGCTGACATG GTCGACCACG
CTGCTCTATG GCGACTATGA CAAATATTAT ACCAACGTCT TTGCCAATGG CCCCGCCACG
AGCCCGACCG GCACCGTCGC CTTGTCGAGC TATACCGATG CGACCCGGCG TCAGAACTTT
ATCGCGCAGA GCAACCTGCT TTGGGACGTC GACCTGGGCG GGATCGACAA CCGGATTCTG
TTCGGCCTCG AATATGGCGA CCAGGATTCG ACGAACCAGC GCCGCAACGG CACGCTGTCG
AACGGCACCC TCGACCTCGC CAACATCGTC TATCCGACGG TCAGTTTCGG CCCGCTGGTC
CGCAACACCG ATTCGCGCGT CCGGTTCTTC TCGGCCTATG CCCAGGATCA GATTGCATTC
GGATCGCATG TCGATCTGGT CCTTGGCGTG CGTTACGACC GGTTCGAGAT CAAGGGCACC
GACCTGATCG GCGCCCCGCG TCCGTTCGCC CGTACCGACG AAAAACTGTC GCCGCGGATC
GGCCTGATCC TCAAGCCACG GGAAAATGTT TCGATCTACG GCAGCTACAG CCGCTCCTTC
CTCCCGCGGT CGGGCGATCA GTTCCTGACC CTGGCGCCCG CGTCGGGATC GTCCCCGGCG
CAGGAGGATC TGACGCCCGA ACGGATGATC AATTACGAAG TCGGCGCCAA ATGGGACATC
CGGCCCGATC TCAATGTCAC AGCGGCGCTG TTCCAGCTCG ACCGCAACAA CACCGCCGTG
CCGGTCGCGG GCGTGCCGGG ATCGCAATTC CTGACCGATA CACGGACCAG GGGTGTCGAG
CTGGCGCTGA CCGGCCGGAT TACGCCGAAC TGGCAGGTGA GCGGCGGCTA CACCTGGCAG
GACGCCCATC GCAAGAATGA CGACAGCATC CGGCTCGGCC AGGTGCCCGA ACATCAGTTC
GCGCTGTGGA ACCGCTATGA TTTCAACCGC AATGTCGGGA TGGGTCTGGG CGTTGTCCAT
CAGTCGAGCC AGTTCGCCGC GATTCGCACC GCGCCCACGA CCACCCGGCT GCCCGCCTTC
ACGCGCGTCG ATGCGGCGCT GTTCGTCAAG GCGAACGAGC GGGTTGCATT TCAGGTCAAT
GTCGAAAATC TGTTCGACGA GCGCTATTTT TCGGACGCGC ACAACCTCAA CAACATCACG
CCGGGGGCGC CGATCAACGC CCGCTTCACG GCGCGCGTCA AATATTGA
|
|---|
| Protein sequence | MHGRPLATHF FRTIAQQCCN SLALALAAPR RSANPTGGHV KKLFLLTAAA ATFPATAVAS
EAEREDARTI LVIGKSDGYV ATNSVTATKT DTPLIDVPQT ISVVTRERLD DQASRSIADV
LRYVPGTTIG QGEGNRDQIT LRGQNTTADF FLDGVRDDVQ YFRSLYNIER VEILKGPFAM
IFGRGGSGGV INRVQKTPSA DALAVGGTVS ANSFGAWDVS ADVNAPLGGG AAFRLNANYE
SLDNHRDFFE GERYAINPYV AADLGRWKLG LSYEYVNDDR VTDRGVPSIA TAPGRPNRPI
TGYRDTFFGV PGVNRTGLEA HIVKARIDGE LAEALTWSTT LLYGDYDKYY TNVFANGPAT
SPTGTVALSS YTDATRRQNF IAQSNLLWDV DLGGIDNRIL FGLEYGDQDS TNQRRNGTLS
NGTLDLANIV YPTVSFGPLV RNTDSRVRFF SAYAQDQIAF GSHVDLVLGV RYDRFEIKGT
DLIGAPRPFA RTDEKLSPRI GLILKPRENV SIYGSYSRSF LPRSGDQFLT LAPASGSSPA
QEDLTPERMI NYEVGAKWDI RPDLNVTAAL FQLDRNNTAV PVAGVPGSQF LTDTRTRGVE
LALTGRITPN WQVSGGYTWQ DAHRKNDDSI RLGQVPEHQF ALWNRYDFNR NVGMGLGVVH
QSSQFAAIRT APTTTRLPAF TRVDAALFVK ANERVAFQVN VENLFDERYF SDAHNLNNIT
PGAPINARFT ARVKY
|
|---|
| |