| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_1988 |
|---|
| Symbol | |
|---|
| ID | 4082153 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingopyxis alaskensis RB2256 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008048 |
|---|
| Strand | - |
|---|
| Start bp | 2096682 |
|---|
| End bp | 2097803 |
|---|
| Gene Length | 1122 bp |
|---|
| Protein Length | 373 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 638010364 |
|---|
| Product | OmpA/MotB |
|---|
| Protein accession | YP_617032 |
|---|
| Protein GI | 103487471 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins
[COG3637] Opacity protein and related surface antigens |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.000257198 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0360376 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGGAAGC TTGCCGTCGC TGTGGCGTTG GCCTCCACCA CCCTCGCGTC GCCGTCCATG
GCGCGCGACG ATTCCTGGTA TGTCGGTGTT GGCGCGGGCG CAATGCTCGT CGAAGACATT
GATCTCGATA TCGGCACCTT CAACAATGCC GGGTCGCTCG ACCATCGCGC GGGCTATGAT
TTCGAAGGCA CCGTCGGTTA TGACTTCGGC GGGTTCCGTG CCGAAGTCGA AGTCGGCTTC
CGTGAAGCCG ACATCAAGTC GGGCCGTTTC GGCAACCCCG GCATCCCGCA GACGGCATCG
GGCGCGGGTA CGCTGTTCAC CGGCTCGACC GACCTGAACG GCGATTCGAA CGCGCTCAGC
TTCATGGTCA ACGGCATGCT CGACTTCGGC GACGACGACG GCCTGCAGGG CTTTGTCGGC
GGTGGCGCCG GTGTCGCCCG CGTGTCGGTC GAACCCGTCT TTGCCGGTCC GTTCCTCGAC
GATTCGGACA CGGGCTTTGC CTGGCAGGCG ATCGCGGGCG TCCGCGCGCC GCTCAGCAGC
AACTGGGACG TCGGCCTGAA GTATCGCTTC TTCAACGCCG ACAATGTCGA TCTGGTGGAT
CAGGCCGGTC GCGACGTTTC GACGCGCTTC CGCTCGCACT CGATCCTCGG CACGCTGACG
TACAACTTCG GCGGCGCTCC GGAGCCGGTG GCGCCTCCGC CGCCGCCTCC GCCGCCCCCG
CCGCCCCCGC CGCCCCCGCC GCCTCCGCCG CCGCCGCCGG TCGTGGAATG CGCGCCTGGG
CCGTACATCG TGTATTTCGA CTGGGATCAG TCGAACATCA CGCCGGAAGC GGCTTCGACG
CTCGACAATG CGATCAGCGC CTATAACCGT GGTTGCACGG GCACGCAGAT CATGCTCGCC
GGTCACGCCG ACCGTTCGGG TTCGGCCCGC TACAACGTCG GCCTGTCGGA ACGCCGCAAC
GATGCGGTTC GCAGCTATCT GACCGCTCGC GGTATCTCGG ATGGTTCGAT CAGCGCGCAG
GCGTTCGGCG AAACCCGTCC GGCCGTTGCG ACCGCCGACG GCGTCCGCAA CGACCAGAAC
CGTCGCGTGG AAATCACTTA CGGTCCGAAC TCGGGCATGT AA
|
|---|
| Protein sequence | MRKLAVAVAL ASTTLASPSM ARDDSWYVGV GAGAMLVEDI DLDIGTFNNA GSLDHRAGYD
FEGTVGYDFG GFRAEVEVGF READIKSGRF GNPGIPQTAS GAGTLFTGST DLNGDSNALS
FMVNGMLDFG DDDGLQGFVG GGAGVARVSV EPVFAGPFLD DSDTGFAWQA IAGVRAPLSS
NWDVGLKYRF FNADNVDLVD QAGRDVSTRF RSHSILGTLT YNFGGAPEPV APPPPPPPPP
PPPPPPPPPP PPPVVECAPG PYIVYFDWDQ SNITPEAAST LDNAISAYNR GCTGTQIMLA
GHADRSGSAR YNVGLSERRN DAVRSYLTAR GISDGSISAQ AFGETRPAVA TADGVRNDQN
RRVEITYGPN SGM
|
|---|
| |