Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sala_1985 |
Symbol | |
ID | 4081029 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingopyxis alaskensis RB2256 |
Kingdom | Bacteria |
Replicon accession | NC_008048 |
Strand | + |
Start bp | 2093653 |
End bp | 2095446 |
Gene Length | 1794 bp |
Protein Length | 597 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 638010361 |
Product | ABC transporter related |
Protein accession | YP_617029 |
Protein GI | 103487468 |
COG category | [V] Defense mechanisms |
COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
TIGRFAM ID | [TIGR02204] ABC transporter, permease/ATP-binding protein |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.384542 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.0512994 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCCAGCC AATCCGACCA GCCCGCCGCG AAAGCCGGAC CCAGCCGCAA GCTCGGCAGT CTGCGCATGG TGTGGCACTA TGCCAGCCGC TACCCGCTGC AACTCGCGGT CGCCGCGGTC GCGCTTGGCA TTGCGGCGCT CGCGACACTC GCAATCCCCT GGCAGTTCAA GGAAATGATC GACAGCGGCT TCATCGCGGG CGGCGGCGAC GTCGCCCCGC ATTTCCGGCT GTTTTACGCC ATCGTCGTTG CGCTGGCGCT GGCGACTGCG CTGCGCTTCT ATTTCGTCAG CTGGCTCGGC GAACGCACCG TCGCCGACAT CCGCCAGGCG GTGCAACGCA ACCTGCTCCG CCTCGCCCCC GGATTTTTCG AGGAAAACCG CCCGTCCGAA ATCGCCTCGC GCATGACCGC GGACACTGCG ATCATCGAAC AGGTCGTCGG CACGACCGTC TCGGTCGCGC TCCGCAACAT GGTGATGGGG ATCGGGGGCA TCGCCTATCT GTTCAGCCTC TCGCCGAAGC TCACGGCGGG CATATTGCTG GGGATTCCGG TCATCATCCT GCCGATCGTA CTCCTCGGTC GGCGGCTCCA GAAAGTGTCG CGCATCAGCC AGGATCGGGT GGCCGACATC GGCGCGACTA CCGCCGAACA GATGGGCGCG ATGAAGATTG TCCAGGCGTT CGGGCAGGAG GCGCGCGAGG CCGACCGCTT CGCCGCCGCG GTCGAAGCCA ATTTCGCGAC CGCCAAGCGC CGCATCCGCC TGCGCGCGAT CATTACCGCG ACGGTCATCG GCCTCCTCTT CGGCGCGATC ACAACGCTGC TGTGGTACGG GGCGGAGGGC GTGGCAACGG GCACGATCAC CGGCGGCACC ATCGCCGCCT TCGTGCTCAC CGGCGGCCTC GTTGCCGGCG CGTTCGGCGC CCTGACCGAG GTATATGGCG ACCTGCTCCG CGCCGCCGGC GCCGCCGAGC GGCTCAGCGA GCTTCTGAAC GCCGAGGCGA CCATCGCGCC GCCCGCGCAC CCGCGCACAT TCCCCGACCC GCCCATCGGC ACGCTCGAGT TTCGCGGCGT CGAGTTCCGC TATCCGACGC GCCCCGATGC GCCGGCGCTC CATGATTTCA GTCTCGCAAT CCGCCCGCGC GAAACCGTTG CGATCGTCGG CCCCTCGGGC GCAGGCAAAT CGACGCTCTT TCAGCTCGCC GAGCGCTTCT ACGATCCGCA GGCGGGACAG ATTCTGCTCG ACGGGGTGCC GCTCGTCGAT GCCGATCCCG CCGACATCCG CGCGCGTGTC GCGATGGTGC CTCAGGAAAC GGTCATCTTC GCGGCCTCGG CGCGCGACAA TCTGCGCTAC GGCAACTGGG CCGCCAGCGA CGAGGATCTG TGGGCCGCCG CGCGCGCCGC CAATGCCGAG GAGTTCCTCC GCAAGCTGCC GCAAGGTCTC GACACATTCA TGGGAGAGGG CGGCGCGCGC CTCTCCGGCG GCCAGCGCCA GCGCGTCGCG ATCGCGCGCG CGCTGCTGCG CCGCGCGCCG CTGTTGCTGC TCGACGAAGC GACGTCGGCG CTCGACGCCG AATCCGAAAA GCTTGTTCAG GACGCGCTCG AAACGCTGAT GCACGACCGC ACCACCGTCG TCATCGCGCA CCGTCTCGCC ACCGTCCGCG CCGCCGACCG CATCGTCGTG ATGGACGAAG GGCGGATCGT CGAAGAGGGG CGCCACGACG ACCTTGTCGC CGCCGACGGC CTTTATGCCC GCCTCGCGCG TCTTCAGTTT CAGGACAGTC TGACCGCGGC CTGA
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Protein sequence | MASQSDQPAA KAGPSRKLGS LRMVWHYASR YPLQLAVAAV ALGIAALATL AIPWQFKEMI DSGFIAGGGD VAPHFRLFYA IVVALALATA LRFYFVSWLG ERTVADIRQA VQRNLLRLAP GFFEENRPSE IASRMTADTA IIEQVVGTTV SVALRNMVMG IGGIAYLFSL SPKLTAGILL GIPVIILPIV LLGRRLQKVS RISQDRVADI GATTAEQMGA MKIVQAFGQE AREADRFAAA VEANFATAKR RIRLRAIITA TVIGLLFGAI TTLLWYGAEG VATGTITGGT IAAFVLTGGL VAGAFGALTE VYGDLLRAAG AAERLSELLN AEATIAPPAH PRTFPDPPIG TLEFRGVEFR YPTRPDAPAL HDFSLAIRPR ETVAIVGPSG AGKSTLFQLA ERFYDPQAGQ ILLDGVPLVD ADPADIRARV AMVPQETVIF AASARDNLRY GNWAASDEDL WAAARAANAE EFLRKLPQGL DTFMGEGGAR LSGGQRQRVA IARALLRRAP LLLLDEATSA LDAESEKLVQ DALETLMHDR TTVVIAHRLA TVRAADRIVV MDEGRIVEEG RHDDLVAADG LYARLARLQF QDSLTAA
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