Gene Sala_1985 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSala_1985 
Symbol 
ID4081029 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingopyxis alaskensis RB2256 
KingdomBacteria 
Replicon accessionNC_008048 
Strand
Start bp2093653 
End bp2095446 
Gene Length1794 bp 
Protein Length597 aa 
Translation table11 
GC content69% 
IMG OID638010361 
ProductABC transporter related 
Protein accessionYP_617029 
Protein GI103487468 
COG category[V] Defense mechanisms 
COG ID[COG1132] ABC-type multidrug transport system, ATPase and permease components 
TIGRFAM ID[TIGR02204] ABC transporter, permease/ATP-binding protein 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.384542 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0512994 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCAGCC AATCCGACCA GCCCGCCGCG AAAGCCGGAC CCAGCCGCAA GCTCGGCAGT 
CTGCGCATGG TGTGGCACTA TGCCAGCCGC TACCCGCTGC AACTCGCGGT CGCCGCGGTC
GCGCTTGGCA TTGCGGCGCT CGCGACACTC GCAATCCCCT GGCAGTTCAA GGAAATGATC
GACAGCGGCT TCATCGCGGG CGGCGGCGAC GTCGCCCCGC ATTTCCGGCT GTTTTACGCC
ATCGTCGTTG CGCTGGCGCT GGCGACTGCG CTGCGCTTCT ATTTCGTCAG CTGGCTCGGC
GAACGCACCG TCGCCGACAT CCGCCAGGCG GTGCAACGCA ACCTGCTCCG CCTCGCCCCC
GGATTTTTCG AGGAAAACCG CCCGTCCGAA ATCGCCTCGC GCATGACCGC GGACACTGCG
ATCATCGAAC AGGTCGTCGG CACGACCGTC TCGGTCGCGC TCCGCAACAT GGTGATGGGG
ATCGGGGGCA TCGCCTATCT GTTCAGCCTC TCGCCGAAGC TCACGGCGGG CATATTGCTG
GGGATTCCGG TCATCATCCT GCCGATCGTA CTCCTCGGTC GGCGGCTCCA GAAAGTGTCG
CGCATCAGCC AGGATCGGGT GGCCGACATC GGCGCGACTA CCGCCGAACA GATGGGCGCG
ATGAAGATTG TCCAGGCGTT CGGGCAGGAG GCGCGCGAGG CCGACCGCTT CGCCGCCGCG
GTCGAAGCCA ATTTCGCGAC CGCCAAGCGC CGCATCCGCC TGCGCGCGAT CATTACCGCG
ACGGTCATCG GCCTCCTCTT CGGCGCGATC ACAACGCTGC TGTGGTACGG GGCGGAGGGC
GTGGCAACGG GCACGATCAC CGGCGGCACC ATCGCCGCCT TCGTGCTCAC CGGCGGCCTC
GTTGCCGGCG CGTTCGGCGC CCTGACCGAG GTATATGGCG ACCTGCTCCG CGCCGCCGGC
GCCGCCGAGC GGCTCAGCGA GCTTCTGAAC GCCGAGGCGA CCATCGCGCC GCCCGCGCAC
CCGCGCACAT TCCCCGACCC GCCCATCGGC ACGCTCGAGT TTCGCGGCGT CGAGTTCCGC
TATCCGACGC GCCCCGATGC GCCGGCGCTC CATGATTTCA GTCTCGCAAT CCGCCCGCGC
GAAACCGTTG CGATCGTCGG CCCCTCGGGC GCAGGCAAAT CGACGCTCTT TCAGCTCGCC
GAGCGCTTCT ACGATCCGCA GGCGGGACAG ATTCTGCTCG ACGGGGTGCC GCTCGTCGAT
GCCGATCCCG CCGACATCCG CGCGCGTGTC GCGATGGTGC CTCAGGAAAC GGTCATCTTC
GCGGCCTCGG CGCGCGACAA TCTGCGCTAC GGCAACTGGG CCGCCAGCGA CGAGGATCTG
TGGGCCGCCG CGCGCGCCGC CAATGCCGAG GAGTTCCTCC GCAAGCTGCC GCAAGGTCTC
GACACATTCA TGGGAGAGGG CGGCGCGCGC CTCTCCGGCG GCCAGCGCCA GCGCGTCGCG
ATCGCGCGCG CGCTGCTGCG CCGCGCGCCG CTGTTGCTGC TCGACGAAGC GACGTCGGCG
CTCGACGCCG AATCCGAAAA GCTTGTTCAG GACGCGCTCG AAACGCTGAT GCACGACCGC
ACCACCGTCG TCATCGCGCA CCGTCTCGCC ACCGTCCGCG CCGCCGACCG CATCGTCGTG
ATGGACGAAG GGCGGATCGT CGAAGAGGGG CGCCACGACG ACCTTGTCGC CGCCGACGGC
CTTTATGCCC GCCTCGCGCG TCTTCAGTTT CAGGACAGTC TGACCGCGGC CTGA
 
Protein sequence
MASQSDQPAA KAGPSRKLGS LRMVWHYASR YPLQLAVAAV ALGIAALATL AIPWQFKEMI 
DSGFIAGGGD VAPHFRLFYA IVVALALATA LRFYFVSWLG ERTVADIRQA VQRNLLRLAP
GFFEENRPSE IASRMTADTA IIEQVVGTTV SVALRNMVMG IGGIAYLFSL SPKLTAGILL
GIPVIILPIV LLGRRLQKVS RISQDRVADI GATTAEQMGA MKIVQAFGQE AREADRFAAA
VEANFATAKR RIRLRAIITA TVIGLLFGAI TTLLWYGAEG VATGTITGGT IAAFVLTGGL
VAGAFGALTE VYGDLLRAAG AAERLSELLN AEATIAPPAH PRTFPDPPIG TLEFRGVEFR
YPTRPDAPAL HDFSLAIRPR ETVAIVGPSG AGKSTLFQLA ERFYDPQAGQ ILLDGVPLVD
ADPADIRARV AMVPQETVIF AASARDNLRY GNWAASDEDL WAAARAANAE EFLRKLPQGL
DTFMGEGGAR LSGGQRQRVA IARALLRRAP LLLLDEATSA LDAESEKLVQ DALETLMHDR
TTVVIAHRLA TVRAADRIVV MDEGRIVEEG RHDDLVAADG LYARLARLQF QDSLTAA