| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_1742 |
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| Symbol | |
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| ID | 4081204 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingopyxis alaskensis RB2256 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008048 |
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| Strand | + |
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| Start bp | 1834820 |
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| End bp | 1835950 |
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| Gene Length | 1131 bp |
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| Protein Length | 376 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 638010117 |
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| Product | pseudouridine synthase, RluD |
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| Protein accession | YP_616788 |
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| Protein GI | 103487227 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0441246 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACAGGC TCCCCAGCGC AGTCGCCGGA TTTTCCGGCG TGGGGCGGTC CTACGGCAGG
CATGGGTGCG AGAGCAAGCT GGTTCCTTTT TCCTTTACCA CGCATCGTCA TCCCGGTCGT
GGGTGCGGTG TCGTCGCCCT TGTAATTGCA CGCCCCAATC CCACATCGCC ATCGATGTTG
GGGGATGACG AGATATTGAC CGTGACGCTG GGCGACACCG CAGCCGGATT GCGGCTCGAC
CGGGCACTTG CCGAAGCGCT CCCCAACCTG TCGCGCGAGC GATTGAAGAG CCTCATCAAG
GGCGGCCGCG TGGTCGATGC CCACGGCGCG ATCCTGTGGG ATCCCGCCGC GAAAGCCGCT
CCGCCTGCGA CGATCGAAAT CCGCGTGCCC GCCGCGCTTC CGGCGCACAA TGCCGCGCAG
GACCTGGACC TCGTCATCGC CTATGAGGAC GCGCATCTGA TCGTCATCGA CAAGCCCGCC
GGGATGGTCG TCCATCCCGC CGCGGGCAAT CTCGACGGCA CGATGGTCAA TGCGTTGCTC
CATCATTGCG CGGGGCAGCT GTCGGGCATC GGCGGGGTCG CGCGGCCGGG GATCGTCCAC
CGCATCGACA AGGATACCAG CGGGCTGATC GTCGCCGCCA AGCACGACAA GGCGCACGAG
GGGCTGGCGA AACAATTCGC CGCGCACAGC ATCGACCGGC GCTACCTCGC GATCGCGACC
GGGCGGCCGA TGCCTGCGAA CGGCACGGTC GATGCGGCGC TCGGCCGCTC GGCCACCAAC
CGCAAGAAGA TGGCGGTCGT CGCCGCGGGC CGCGGCAAAC ATGCGCTCAC CCACTATCGC
ACGGTCGAGC CGCTCCAGGG CGCGACCTTG ATCGAATGTC GGCTGGAGAC CGGGCGCACG
CATCAGGTGC GCGTCCATAT GGCGCATATC GGCCATCCGC TGGTCGGCGA CCCGGTCTAT
GGCCGCGCCC GAAAGCCGCT GTCGGACGTG CTGAAAGCGC GCAATTTCGC GCGGCAGGCA
TTGCACGCGG CCCATTTGGG CTTTATTCAC CCGGTAACAG GTAACAGGAT CGCGCTCGAC
AGCGAACTCC CGGCGGACAT GCGGGAACTG ATCGATGAAC TGCGCGTTTA G
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| Protein sequence | MNRLPSAVAG FSGVGRSYGR HGCESKLVPF SFTTHRHPGR GCGVVALVIA RPNPTSPSML
GDDEILTVTL GDTAAGLRLD RALAEALPNL SRERLKSLIK GGRVVDAHGA ILWDPAAKAA
PPATIEIRVP AALPAHNAAQ DLDLVIAYED AHLIVIDKPA GMVVHPAAGN LDGTMVNALL
HHCAGQLSGI GGVARPGIVH RIDKDTSGLI VAAKHDKAHE GLAKQFAAHS IDRRYLAIAT
GRPMPANGTV DAALGRSATN RKKMAVVAAG RGKHALTHYR TVEPLQGATL IECRLETGRT
HQVRVHMAHI GHPLVGDPVY GRARKPLSDV LKARNFARQA LHAAHLGFIH PVTGNRIALD
SELPADMREL IDELRV
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