| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_1713 |
|---|
| Symbol | |
|---|
| ID | 4081290 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingopyxis alaskensis RB2256 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008048 |
|---|
| Strand | - |
|---|
| Start bp | 1803090 |
|---|
| End bp | 1804073 |
|---|
| Gene Length | 984 bp |
|---|
| Protein Length | 327 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 638010087 |
|---|
| Product | SecF protein |
|---|
| Protein accession | YP_616759 |
|---|
| Protein GI | 103487198 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0341] Preprotein translocase subunit SecF |
|---|
| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR00966] protein-export membrane protein SecF |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.24873 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGTTTGC TGAAACTCGT CCCCGACGAC ACCAATATCC AGTTCCTGAA GTGGCGCAAC
GTAGCCATGG CGATCAGCTT GCTGATGATC GTCGCGTCGA TCGCGCTTGT CGCGGTGCGC
GGCCTGAATC TTGGCGTCGA CTTTGTCGGC GGCCAGTCGG TGCGCGTCGA GTTCACCGGG
GCGATGCCGC CGATCGACGA GATCCGCGAA AAGGTCGGCG CCATCGGCCT CGGCGAAGCG
ACGATCCAGC AGTTCGGATC GGACAAGGCG GTGTCGATCC GCACCGCGCT GCCCGAAGGC
GACAAGGCGG CTGCCGAACG CGCCGGGCAA CGGCTGGTCG CGGGCATTGC CGACGCCTTT
CCCACCGCGA AGACCGGATC GGTCGAAACC GTGTCGGGCA AGGTGTCGGA GGAACTGCTG
CGCACCGGGG CGCTCAGCCT GATCCTCGCG ATGATCGCCA TCTCCATCTA TATCTGGATC
CGCTTCGAAT GGCAGTTCGG CGTCGGTGCG CTGTTCGCGC TGTTCCACGA CGTCACGCTG
ACCTTTGGCT TCTTTGCGCT GACGCAGATG CAGTTTGACC TCAACATCGT CGCCGCGCTG
CTCACCATCA TCGGTTATTC GCTCAACGAC ACGATTGTCG TGTTCGACCG GATTCGCGAA
AATCTGAAGA AATATCGCAA GATGGAGATC ATCCCGCTGC TCGACCTCAG CGTCAACGAA
ACGCTGGCGC GCACCGTGAT GACCAGCTTC ACCATGCTGA TCGCGCTGGC GGTGCTGCTG
TGGGTCGGGC CCGACGTGAT CTTCGGCTTC ACCGCGGCGA TGCTGCTCGG CATCTTTGTC
GGCACCTATT CGTCGGTCTA TATGTCGGCG CCGATCCTCG TGTGGCTGAA AGTCGGTCCC
CACAGCTTCG TGCCGCGCAC CACGGCGGTG ACCGAAGGCG CCGAGCGGGT GTCGAACAGG
AACGACGACG GCGCGGTGGT TTGA
|
|---|
| Protein sequence | MRLLKLVPDD TNIQFLKWRN VAMAISLLMI VASIALVAVR GLNLGVDFVG GQSVRVEFTG
AMPPIDEIRE KVGAIGLGEA TIQQFGSDKA VSIRTALPEG DKAAAERAGQ RLVAGIADAF
PTAKTGSVET VSGKVSEELL RTGALSLILA MIAISIYIWI RFEWQFGVGA LFALFHDVTL
TFGFFALTQM QFDLNIVAAL LTIIGYSLND TIVVFDRIRE NLKKYRKMEI IPLLDLSVNE
TLARTVMTSF TMLIALAVLL WVGPDVIFGF TAAMLLGIFV GTYSSVYMSA PILVWLKVGP
HSFVPRTTAV TEGAERVSNR NDDGAVV
|
|---|
| |