| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_1594 |
|---|
| Symbol | |
|---|
| ID | 4083031 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingopyxis alaskensis RB2256 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008048 |
|---|
| Strand | + |
|---|
| Start bp | 1670334 |
|---|
| End bp | 1670900 |
|---|
| Gene Length | 567 bp |
|---|
| Protein Length | 188 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 638009963 |
|---|
| Product | ATP-dependent protease peptidase subunit |
|---|
| Protein accession | YP_616640 |
|---|
| Protein GI | 103487079 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG5405] ATP-dependent protease HslVU (ClpYQ), peptidase subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.403262 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.524788 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCCATC CCCACGCGCA AAGTGCCGCG CCCTGGCACG GAACCACCAT TCTTTCGGCC
CGCAACGAAG GCAAGGTCGT CGTCATCGGC GACGGGCAGG TGTCGATGGG CCAGACGGTG
ATGAAGCCCA ACGCCCGCAA GGTCCGCCGC CTGCACGACG GCAGCGTGAT CGGCGGCTTC
GCGGGCGCGA CCGCCGACGC TTTCACGCTG TTCGAGCGGC TCGAGGCCAA GCTGGAGCGC
CACAACGGCC AGCTTCTCCG CGCCGCGGTC GAACTGGCGA AGGACTGGCG CACCGACAAA
TATCTGCGCA ACCTGGAGGC GATGATGATC GTCGCCGACA GGGAAGTCAC GCTCGTCATC
ACCGGCAACG GCGACGTGCT CGAACCCACG GGCGGCATCG TCGCGATCGG CTCGGGCGGC
AATTTCGCGC TGTCGGCGGC CCGCGCGCTC GCCGATTACG AAAAAGACCC CGAGGTGCTG
GCGAAAAAGG CGATGGCCGT CGCCGCCGAG ATCTGCGTCT ATACCAACGA CCAGTTCACG
CTCGAAACCA TCGAAATCCA GGCGTAA
|
|---|
| Protein sequence | MTHPHAQSAA PWHGTTILSA RNEGKVVVIG DGQVSMGQTV MKPNARKVRR LHDGSVIGGF
AGATADAFTL FERLEAKLER HNGQLLRAAV ELAKDWRTDK YLRNLEAMMI VADREVTLVI
TGNGDVLEPT GGIVAIGSGG NFALSAARAL ADYEKDPEVL AKKAMAVAAE ICVYTNDQFT
LETIEIQA
|
|---|
| |