| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_1585 |
|---|
| Symbol | |
|---|
| ID | 4083022 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingopyxis alaskensis RB2256 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008048 |
|---|
| Strand | - |
|---|
| Start bp | 1660411 |
|---|
| End bp | 1662372 |
|---|
| Gene Length | 1962 bp |
|---|
| Protein Length | 653 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 638009954 |
|---|
| Product | polysaccharide biosynthesis protein CapD |
|---|
| Protein accession | YP_616631 |
|---|
| Protein GI | 103487070 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1086] Predicted nucleoside-diphosphate sugar epimerases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.216403 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.968528 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGTTTGAAC GATTCTTCAC TGATGCTTCG ACCCAAATGA TCACGTTCGC TGCGCGTATG
CTTTTCTGGC CGCGTTGGGG AAAGCTGCTG CTTGTTCTCG TTTGCGACGC GATTTTGGGA
CTGGTAGCGT CCGCGATGGC CTTTTCCATT CGGTTGGGCG AATGGAGTTC CGATGACTGG
CCGGTCCTGC GCTTTGGCCT CACCATGTTG TTGCTATGGT TTCCGATTGC CTTTTGGCGC
GGGATCTATT CGGCCATATT TCGATACGCC GGTCGCGGGG TATTGATCTC GCTGGCGGTG
GCCGTCGCCA TGATGACGGT GCCGCTGATC GTCATCTATA TGTATGTCGG TTATCCAGGT
GTGCCTCGGA CGATCGCCAT TCTCGGCCCG ATCCTGTTCC TGCTGCTTAT GGGAGTCGCG
CGGATCGTCG GCCGCTATGT GCTGGTGGAT CTTTTCCATT CGCGTGACTT TGTGGGGCGC
GAGCGGAACG TGCTCATCTA TGGTGCCGGC ACGACCGGTC AGCGATTGGC AGCATCTTTG
AGTTCCGAAG GCGGCCTGAG GGTTGCGGGC TTTCTTGACG ATGATCGTGA CAAGCGGGGC
AAGCGAATAG ACGGTGCCCG CATCTTTCAC AGCGACGATA TCGAAAGCGT GCTGAATCAG
CTCGGCGTCA CCGACATCGT TCTGGCGATG ACGCAGGTCG GCGATGAGCG GCGCAAGCAG
ATCATCCGGA ATCTGGCGCG GTTCAGCATA AACGTCCAGA TGCTTCCACC CGTCAGGGAC
ATTCTTGAAG GCAAGATTTC GGCAAGCGCC ATCCGTCCGA TAGAGGTCGA GGATCTGTTG
GGTCGCCCGC CGGTGGCACC CGACCGGGAA TTGTTGTCGC GGTCCGTCAA GGGCAAGCAT
GTGATGGTAA CCGGCGCCGG CGGTTCGATC GGCAGCGAAT TGTGCCGACA GATACTACGG
CTGGCACCGC ACTCGCTCAC CCTCGTCGAA TCCAGTGAGT TTTCCCTCTT CAGGCTTCAA
AACGAACTGG AAGCGATCCT CGATCGGCTC CCCGACGGTA TCCGGCCCCT TCTTCGGGCG
AAATTGTCGA ATGTTGCGGA TGCCGCAGCG GTGGAGCGCC TGTTCGCTGA TGAGGCGCCC
GACACCATCT ATCATGCCGC GGCGTACAAG CATGTGCCGC TGCTGGAGGA GAACCCGCTT
GACGGCGTCG CCAACAATAT CCGCGGCACA CGCAACATGG CCGAGATGGC CGTCAAAAAG
GGTGTCGGTC GCTTTATTCT GATCAGCACC GACAAGGCCG TGCGTCCTCC GAACGTGATG
GGGGCCAGCA AACGCGTCTG CGAGATGCTG CTGCAGGACA TGAGCCGGTC GCGGAAGCCC
GACGGCACCA TTTTCTCGAT GGTTCGCTTC GGCAACGTGC TGGGTTCGAG CGGATCGGTC
GTTCCGACCT TTCGACAACA GATCGAACGC GGCGGCCCGG TGACGGTGAC CCACCGCGAT
GTTACACGCT ATTTCATGAC GATCCCCGAA GCGGCCGAGC TGGTGATCCA GGCAGGCAGC
ATGGCGACGG GCGGCGAAGT GTTCCTGCTC GATATGGGGG AGCCGGTGCG CATCTGGGAC
CTCGCCGAAA CCATGGTGCG GCTGTCCGGC CTTACGATCC GTTCGTCCGC CAACCCCGGT
GGCAGCATCG AGATCGTCGA GCGCGGGTTG CGCAAGGGCG AAAAATTGTT CGAGGAACTT
CTGGTCGGCG AGGAATCGCA GCCCACCGCG CATCCGCGGA TCATGCAGGC GCGCGAAGAA
TGTGTCAGCC ACGAGTGCCT TTATGAATAT CTGACGGCAA TCGAGGCCGC GATTGCGGCG
GCCGATCCCC GTGGTTGCCG AGCCGCATTG AAACGGCTAG TGCCCACCCT GCACGATCAG
TCCCCAGCAA CCGTCCCCGC GCCGGAACAT TCAACTAGAT GA
|
|---|
| Protein sequence | MFERFFTDAS TQMITFAARM LFWPRWGKLL LVLVCDAILG LVASAMAFSI RLGEWSSDDW
PVLRFGLTML LLWFPIAFWR GIYSAIFRYA GRGVLISLAV AVAMMTVPLI VIYMYVGYPG
VPRTIAILGP ILFLLLMGVA RIVGRYVLVD LFHSRDFVGR ERNVLIYGAG TTGQRLAASL
SSEGGLRVAG FLDDDRDKRG KRIDGARIFH SDDIESVLNQ LGVTDIVLAM TQVGDERRKQ
IIRNLARFSI NVQMLPPVRD ILEGKISASA IRPIEVEDLL GRPPVAPDRE LLSRSVKGKH
VMVTGAGGSI GSELCRQILR LAPHSLTLVE SSEFSLFRLQ NELEAILDRL PDGIRPLLRA
KLSNVADAAA VERLFADEAP DTIYHAAAYK HVPLLEENPL DGVANNIRGT RNMAEMAVKK
GVGRFILIST DKAVRPPNVM GASKRVCEML LQDMSRSRKP DGTIFSMVRF GNVLGSSGSV
VPTFRQQIER GGPVTVTHRD VTRYFMTIPE AAELVIQAGS MATGGEVFLL DMGEPVRIWD
LAETMVRLSG LTIRSSANPG GSIEIVERGL RKGEKLFEEL LVGEESQPTA HPRIMQAREE
CVSHECLYEY LTAIEAAIAA ADPRGCRAAL KRLVPTLHDQ SPATVPAPEH STR
|
|---|
| |