Gene Sala_1560 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSala_1560 
Symbol 
ID4082730 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingopyxis alaskensis RB2256 
KingdomBacteria 
Replicon accessionNC_008048 
Strand
Start bp1624715 
End bp1625287 
Gene Length573 bp 
Protein Length190 aa 
Translation table11 
GC content66% 
IMG OID638009929 
Productmembrane protein-like protein 
Protein accessionYP_616606 
Protein GI103487045 
COG category[S] Function unknown 
COG ID[COG2119] Predicted membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.00722707 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAAGCCC TGTTCACCTC GACCGCGGTC GTCGCGCTCG CCGAAATCGG CGACAAGACG 
CAGTTGCTCG CGATCCTGCT CGCGGCGCGC TTTGGACGCC CGCTGCCGAT CATCCTTGGC
ATATTGGTCG CAACGCTTGC GAACCACGCC CTCGCGGCGC TGCTCGGCGC GCAGGCGGCC
GCCCTGCTCG ACAGCCCGCT CTTTCGCTAT GCCATCGGAG CGTCGTTCAT CGCGATGGCG
GCATGGACGC TGGTGCCCGA TACATTCGAC GATGACGATG ACCCGAAACC GCGCTTCGGC
GCCTTTCTGA CGACGCTCAT CGCCTTCTTC CTCGTCGAAA TGGGGGACAA GACGCAGGTG
GCGACGATCG CGCTCGGTGC GCAATATCAG GCGGTCGTCG CGGTCACCGC GGGCACGACG
CTCGGCATGA TGATCGCCAA TGTGCCTGCG GTCTTCCTTG GCAACGAACT GCTGAAGCGG
GTCGACCTTG CCAGGGTGCG CCGGATCGCC GCCGCGCTGT TTCTTGTGAT CGGGATCTGG
GTGCTCGCCC AGACGGCGGG GTGGCTGCGG TAG
 
Protein sequence
MEALFTSTAV VALAEIGDKT QLLAILLAAR FGRPLPIILG ILVATLANHA LAALLGAQAA 
ALLDSPLFRY AIGASFIAMA AWTLVPDTFD DDDDPKPRFG AFLTTLIAFF LVEMGDKTQV
ATIALGAQYQ AVVAVTAGTT LGMMIANVPA VFLGNELLKR VDLARVRRIA AALFLVIGIW
VLAQTAGWLR