| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_1541 |
|---|
| Symbol | |
|---|
| ID | 4082440 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingopyxis alaskensis RB2256 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008048 |
|---|
| Strand | + |
|---|
| Start bp | 1607527 |
|---|
| End bp | 1609035 |
|---|
| Gene Length | 1509 bp |
|---|
| Protein Length | 502 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 638009909 |
|---|
| Product | amidophosphoribosyltransferase |
|---|
| Protein accession | YP_616587 |
|---|
| Protein GI | 103487026 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0034] Glutamine phosphoribosylpyrophosphate amidotransferase |
|---|
| TIGRFAM ID | [TIGR01134] amidophosphoribosyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.267372 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGCCCTCCC TATATGCGCG GCAGTCACTG CCCCCCTGCC GCTGGAACGC CATGCTGACG
ACCCATCCTT TCGACGACGA CAAGCTCCGC GAGGAGTGCG GCGTCTTTGG CATTCACGGC
GCCGACAGCG CTTCGGCGGT CGTTGCGCTG GGTCTCCACG CGCTCCAGCA CCGCGGACAG
GAAGCCGCGG GCATCACCGC CTTCGATGGC AAGGAGTTTC ACACCCACCG CGCGATGGGG
CATGTCGCCG GCAATTTCGA TCGCGACGAG ATCATCCGTC AATTGGACGG CGCTTCGGCG
GTCGGTCACG TCCGCTATTC GACCACCGGC GAAACGGCCC TGCGCAACGT CCAGCCGCTG
TTCGCCGACC TGTCGACGGG CGGTTTTGCG ATCGCGCACA ACGGCAATAT CTCGAACGCC
GCCGCGCTCC GCAAGCTGCT CGTCCGCCGC GGTTCGATCT TTCAGTCGAC CAGCGATACC
GAGGTGATCA TCCACCTCGT CGCGACCTCG AGTTACCGCT CGCTGCTCGA CCGTTTCATC
GACGCGCTGA AACAGGTCGA GGGCGCCTAT TCGCTCATCT GCCTGACCGC CGAGGGCATG
ATCGGCTGCC GCGACCCGCT CGGCATCCGC CCGCTCGTGA TCGGCAAGCT CGGCGACGCG
CACATCCTCG CGTCCGAAAC GGTGGCGCTC GACGTCGTCG GTGCGGAGTT CCTGCGTTCG
GTCGAACCGG GCGAGCTCAT CATCATCCGC GACGGCCAGC TCACCTCGCA CCGTCCCTTT
GCCGAACAAT CGGCGCGGCC GTGCATTTTC GAATATGTCT ATTTCTCGCG CCCCGATTCG
ATCGTCGACG GCACCAGCGT CTATTCGGTG CGCAAGGCGA TCGGCGCCGA ACTCGCGCGC
GAAAATCCGG TCGATGCCGA CCTGGTCATC CCGGTCCCCG ATTCGGGCAC GCCCGCCGCG
ATCGGCTATG CGCAGGAATC GGGCATCCCG TTCGAGCTTG GCATCATCCG TTCGCACTAT
GTCGGACGCA CCTTCATCCA GCCGGGCGAC AAGGTCCGCC ACCTTGGCGT CAAATTGAAG
CACAACGCCA ACCGCGCGCT GATCGCGGGC CAGCGCATCG TGCTGATCGA CGATTCGATC
GTGCGCGGCA CGACGAGCCT CAAGATCGTG CAGATGATGC GCGATGCCGG GGCGGCGGAA
GTGCATATGC GCATCGCCAG CCCGCCGACC TCGCACAGCT GCTTCTATGG CGTCGACACG
CCCGAGCGCG CCAAGCTGCT CGCGGCGCAG ATGACGATCG GCCAGATGGC GAACTTCATC
AATGCCGACA GCCTCGCCTT CCTGACCATC GACGGCCTCT ATCGCGCGCT GGGCGAGGCG
GATCGCAAAC AGGACGCGCC GCAATATTGC GACGCCTGCT TCACCGGCGA CTATCCGACC
ACGCTGACCG ACTTCGACGA GCATGGGCTG GAGGATCAAT TTTCGCTGCT TGCCGAACGG
GTTGTCTGA
|
|---|
| Protein sequence | MPSLYARQSL PPCRWNAMLT THPFDDDKLR EECGVFGIHG ADSASAVVAL GLHALQHRGQ
EAAGITAFDG KEFHTHRAMG HVAGNFDRDE IIRQLDGASA VGHVRYSTTG ETALRNVQPL
FADLSTGGFA IAHNGNISNA AALRKLLVRR GSIFQSTSDT EVIIHLVATS SYRSLLDRFI
DALKQVEGAY SLICLTAEGM IGCRDPLGIR PLVIGKLGDA HILASETVAL DVVGAEFLRS
VEPGELIIIR DGQLTSHRPF AEQSARPCIF EYVYFSRPDS IVDGTSVYSV RKAIGAELAR
ENPVDADLVI PVPDSGTPAA IGYAQESGIP FELGIIRSHY VGRTFIQPGD KVRHLGVKLK
HNANRALIAG QRIVLIDDSI VRGTTSLKIV QMMRDAGAAE VHMRIASPPT SHSCFYGVDT
PERAKLLAAQ MTIGQMANFI NADSLAFLTI DGLYRALGEA DRKQDAPQYC DACFTGDYPT
TLTDFDEHGL EDQFSLLAER VV
|
|---|
| |