Gene Sala_1417 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSala_1417 
Symbol 
ID4081734 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingopyxis alaskensis RB2256 
KingdomBacteria 
Replicon accessionNC_008048 
Strand
Start bp1471095 
End bp1471388 
Gene Length294 bp 
Protein Length97 aa 
Translation table11 
GC content61% 
IMG OID638009783 
Productintegration host factor, alpha subunit 
Protein accessionYP_616464 
Protein GI103486903 
COG category[L] Replication, recombination and repair 
COG ID[COG0776] Bacterial nucleoid DNA-binding protein 
TIGRFAM ID[TIGR00987] integration host factor, alpha subunit 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.097817 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.411662 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCGCAG GAACGCTTAC GCGCGCAGAT ATTGCGAGCC GGATCAATCA GCAGATCGGG 
CTGTCGCGCA ATGAATCGGC CGCCATCGTC GAATCGATTC TCGATCATAT GTCCGATGCG
CTTGCCGCTG GTCAGAATGT GAAGATTTCG GGTTTTGGCA CCTTTGTCCT GCGCGACAAG
GCGCAGCGAA TCGGCCGCAA TCCCAAAACG GGCGTGGAAG TGCCGATCCT GCCGCGGCGG
GTGATGACCT TTCGCGCCAG CCAGTCGATG CGCGCCCGCG TCGCGGGCAA ATAG
 
Protein sequence
MSAGTLTRAD IASRINQQIG LSRNESAAIV ESILDHMSDA LAAGQNVKIS GFGTFVLRDK 
AQRIGRNPKT GVEVPILPRR VMTFRASQSM RARVAGK