Gene Sala_1331 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSala_1331 
Symbol 
ID4081002 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingopyxis alaskensis RB2256 
KingdomBacteria 
Replicon accessionNC_008048 
Strand
Start bp1393679 
End bp1394989 
Gene Length1311 bp 
Protein Length436 aa 
Translation table11 
GC content64% 
IMG OID638009694 
Product3-methyl-2-oxobutanoate dehydrogenase (lipoamide) 
Protein accessionYP_616378 
Protein GI103486817 
COG category[C] Energy production and conversion 
COG ID[COG1071] Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00114288 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0467379 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCTGAAA CGCCTGCCCG GGCGGATAAG GGGCGTCCGG CGAGCAACCT GCCGCCGCTG 
TCGCTTCATA TCCCCGAACC GCGCTATCGC CCCGGCGACA CGCCCGACTT CAGCGACATC
GAAATCCCTG CGGTTGAGGC GACCCCGCGT CCCGGTGAAG CGACCAGGCC CGACGCAATG
CGCGAGCTTT GCTATGGCCT TGTCCGCGTC CTCGATTTCG ACGGCATCGC CAAGGGGCCA
TGGAATCCCA ACCTCGCCCC CGACCGGCTG CGCACCATGC TGCGTTACAT GATGCTGACG
CGCGCGTTCG ACGATCGCAT GTTCCGCGCA CAGCGGCAGG GCAAGACCAG CTTCTACATG
AAATGCACGG GCGAGGAGGC AACCTCGATC GCCTCGACGA TGGCGATCGA CCGCGCCGAC
ATGTGCTTCC CCAGCTATCG CCAGCAGGGC ATTTTGATCG CGCGCGACTA TCCGCTGATC
CAGATGATGA ACCAGATTTA CTCGAATCGC GGCGATCACC TGTTGGGGCG GCAACTCCCG
ATCATGTATT CGGCGCCCGA ACATGGGTTT TTCAGCGTGT CGGGCAACCT CGCCACCCAA
TATCCACAGG CGGTGGGCTG GGCGATGGCA TCGGCGTCGA AGGGCGACAC GCGGATCGCG
ACCGTGTGGT GCGGCGAAGG CTCGTCCGCC GAGGGGGATT TCCACTCAGC GCTGACTTTC
GCCACCGTTT ATAATGCCCC CGTGATTTTC AATGTCGTCA ATAACCAGTG GGCTATTTCG
AGCTTTTCGG GCTTTGCCGG CGGCGAGCGC ACGACCTTTG CGGCGCGTGC GGTGGGTTAT
GGCATCGCGG GGCTGCGCGT CGATGGCAAC GACCCGCTCG CGGTCTATGC GGCAACGCAA
TGGGCAGCCG ATCGCGCGCG GACGAACAAC GGCCCGACGC TGATCGAACA TTTCACCTAT
CGCGCCGAAG GGCACAGCAC CTCGGACGAC CCCGGCGCCT ATCGCGCGGC GCAGGAAGCG
AGCGCCTGGC CGTTCGGCGA CCCGATCGCG CGGCTCAAGC AGCATCTGAT CGCGCTTGGC
GAATGGGACG ACGCGCGCCA CGAAGCGCAG GCGAAGGAAC TCGACGATCT GGTCAAGACG
ACGCAGAAGC AGTCGGAAAA GCTTGGCATA TTGGGTCACG GGATGCACCA GCCGTTCGAA
ACGATGTTCG AGGACGTTTT CGAGGAGATG CCCTGGCACC TCAAGGAACA ATGCGCGCAG
ATGCTCGCCG AGCAAGAGGC CAAGTTCGGC CCCGACTGGA AGCCCGAATG A
 
Protein sequence
MPETPARADK GRPASNLPPL SLHIPEPRYR PGDTPDFSDI EIPAVEATPR PGEATRPDAM 
RELCYGLVRV LDFDGIAKGP WNPNLAPDRL RTMLRYMMLT RAFDDRMFRA QRQGKTSFYM
KCTGEEATSI ASTMAIDRAD MCFPSYRQQG ILIARDYPLI QMMNQIYSNR GDHLLGRQLP
IMYSAPEHGF FSVSGNLATQ YPQAVGWAMA SASKGDTRIA TVWCGEGSSA EGDFHSALTF
ATVYNAPVIF NVVNNQWAIS SFSGFAGGER TTFAARAVGY GIAGLRVDGN DPLAVYAATQ
WAADRARTNN GPTLIEHFTY RAEGHSTSDD PGAYRAAQEA SAWPFGDPIA RLKQHLIALG
EWDDARHEAQ AKELDDLVKT TQKQSEKLGI LGHGMHQPFE TMFEDVFEEM PWHLKEQCAQ
MLAEQEAKFG PDWKPE