| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_1278 |
|---|
| Symbol | |
|---|
| ID | 4082529 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingopyxis alaskensis RB2256 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008048 |
|---|
| Strand | + |
|---|
| Start bp | 1336018 |
|---|
| End bp | 1337196 |
|---|
| Gene Length | 1179 bp |
|---|
| Protein Length | 392 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 638009638 |
|---|
| Product | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase |
|---|
| Protein accession | YP_616325 |
|---|
| Protein GI | 103486764 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0245] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
[COG1211] 4-diphosphocytidyl-2-methyl-D-erithritol synthase |
|---|
| TIGRFAM ID | [TIGR00151] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
[TIGR00453] 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.713555 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGAGT CCGCTGCCCC GTCTCCGCGC TGCGTCGCCG CGATCCTGCT CGCCGGCGGC
CGCGGGCTGC GTGCTGGCTT TGGACGGCCC AAGCAGCTCG AGTGGCTTTG TGGCAAACCG
GTGCTGCGCT GGAGCCTCGA CGTTCTGGCG GGCTACCCCG GCCTTTCGGG CGGCGTGCTG
GTGGCGAACC ATGACGTCAT GGCGGCGACA TACCCCTTGC CGGAAGGGTG GATGGCCGCC
GATCCCGGCG TTGAGCGACA ACAATCGGTT GCCAATGCGC TGTCCGCGCT GACCGACTGG
CCCGACGATG CAGTCGTGCT CGTCCATGAT GCCGCCCGCC CCGGCGTCGA TTCCGCCGTC
GTCGATCGGC TGCTGGCCGC ACTCGACGGC GCCGACGCCG CGATCCCGGT GCTGCCCGTC
CCCGACACGC TGGTCGAGGC CGCCGATGGC GCGGCGGGCG CGGTCGTCGC GCGCGACCGG
CTGGCGCGCG TGCAGACGCC GCAGGCCTTT CGCCTCGGCA CCCTGCGCCG CGCGCATGCC
GAAGCATCCG GCGCCGCTGC GACCGACGAT GCGCAGCTCG TCCGCAGCCT TGGCGTCTCG
GTGGCGACGG TCGAAGGTGA TGCGCGGCTC CACAAATTGA CATATGCCGC GGATATGGCG
ATTCTGGCCG GGCTGCTGGG GACGAAGGAC ATGATGCGAA CCGCCGTGGG CATGGGCTAT
GACGTCCACC GCCTCGTCGA GGGCAAGCCC TTGTGGATCG GCGGTATAGA AATAGCGCAT
AGTCATGGAC TTGAAGGGCA TAGCGATGCC GACGTCGGGC TTCACGCGCT GACCGATGCG
ATCCTTGGCG CGCTGGGCGA CGGCGACATT GGCGATCATT TCCCACCGAG CGACCCGCAA
TGGCGCGGCG CCGCATCGCA CCATTTCCTC TCCTTTGCGG GCGAGCGCGT CGCCGCAAAT
GGCGGACGGA TCGGCCATCT CGACCTCACC ATCATCGCGG AAGCGCCGCG GATCGGCCCG
CACCGCGTCG CCATCCGCGA CCGCATTGCC GAAATCCTTG CGATTCCGGC GGGAAGGGTT
AGTGTGAAGG CGACAACGAC GGAGCGGCTG GGTTTCACCG GCCGCCGCGA GGGGATCGCG
GCCCAGGCCG TTGCAACCAT CCAACTTCCG GAGACCTGA
|
|---|
| Protein sequence | MTESAAPSPR CVAAILLAGG RGLRAGFGRP KQLEWLCGKP VLRWSLDVLA GYPGLSGGVL
VANHDVMAAT YPLPEGWMAA DPGVERQQSV ANALSALTDW PDDAVVLVHD AARPGVDSAV
VDRLLAALDG ADAAIPVLPV PDTLVEAADG AAGAVVARDR LARVQTPQAF RLGTLRRAHA
EASGAAATDD AQLVRSLGVS VATVEGDARL HKLTYAADMA ILAGLLGTKD MMRTAVGMGY
DVHRLVEGKP LWIGGIEIAH SHGLEGHSDA DVGLHALTDA ILGALGDGDI GDHFPPSDPQ
WRGAASHHFL SFAGERVAAN GGRIGHLDLT IIAEAPRIGP HRVAIRDRIA EILAIPAGRV
SVKATTTERL GFTGRREGIA AQAVATIQLP ET
|
|---|
| |