Gene Sala_1272 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSala_1272 
Symbolhfq 
ID4082523 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingopyxis alaskensis RB2256 
KingdomBacteria 
Replicon accessionNC_008048 
Strand
Start bp1328059 
End bp1328649 
Gene Length591 bp 
Protein Length196 aa 
Translation table11 
GC content56% 
IMG OID638009632 
ProductRNA-binding protein Hfq 
Protein accessionYP_616319 
Protein GI103486758 
COG category[R] General function prediction only 
COG ID[COG1923] Uncharacterized host factor I protein 
TIGRFAM ID[TIGR02383] RNA chaperone Hfq 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.192237 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGCCGCATA TTGCGAGCAA GAAGAAGGTC TTGAAAGCCG GAAAACCGGC GCCGTGTCCG 
CGGTTTCACC GCCAAGAACA GGAGGCAAAT GTGTCCGATA AAAATCAGAA TCTTCAGGAT
ATTTTCCTCA ACGCTCTCCG TAAAAGTAAA ACCCCGGTCA CGATGTTTCT CGTCAAGGGG
GTCAAGCTTC AGGGCATCAT CACCTGGTTC GACAATTTCT CGCTGCTGCT ACGGCGCGAC
GGCCAGTCGC AACTGGTGTA CAAGCACGCG ATTTCGACCG TGATGCCTTC GCATGATTTC
GACCTGTCGC TGCTCGGCGG CAACCTGCGC GACGCGCCGG CGAGCAAGGG CAAAGCGCTG
CAGGATGTAT TCCTCAACGC CGTTCGTCGC TCGGATGAGT CGGTGACGAT GTTCCTCGTC
AACGGCGTCA TGTTGCAGGG CGACATTGTG GCATTCGACC TGTTCTGCAT GTTGCTCGAA
CGTGAGCGAC AGGTCCAGCT TGTTTACAAG CACGCGATTT CGACGGTCCA GCCCAACGGT
CCCATCAACC TGACCGACAA TGGCGACGAC GAAGCGGCGG AAGACAGCTG A
 
Protein sequence
MPHIASKKKV LKAGKPAPCP RFHRQEQEAN VSDKNQNLQD IFLNALRKSK TPVTMFLVKG 
VKLQGIITWF DNFSLLLRRD GQSQLVYKHA ISTVMPSHDF DLSLLGGNLR DAPASKGKAL
QDVFLNAVRR SDESVTMFLV NGVMLQGDIV AFDLFCMLLE RERQVQLVYK HAISTVQPNG
PINLTDNGDD EAAEDS