Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sala_1272 |
Symbol | hfq |
ID | 4082523 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingopyxis alaskensis RB2256 |
Kingdom | Bacteria |
Replicon accession | NC_008048 |
Strand | - |
Start bp | 1328059 |
End bp | 1328649 |
Gene Length | 591 bp |
Protein Length | 196 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 638009632 |
Product | RNA-binding protein Hfq |
Protein accession | YP_616319 |
Protein GI | 103486758 |
COG category | [R] General function prediction only |
COG ID | [COG1923] Uncharacterized host factor I protein |
TIGRFAM ID | [TIGR02383] RNA chaperone Hfq |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.192237 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGCCGCATA TTGCGAGCAA GAAGAAGGTC TTGAAAGCCG GAAAACCGGC GCCGTGTCCG CGGTTTCACC GCCAAGAACA GGAGGCAAAT GTGTCCGATA AAAATCAGAA TCTTCAGGAT ATTTTCCTCA ACGCTCTCCG TAAAAGTAAA ACCCCGGTCA CGATGTTTCT CGTCAAGGGG GTCAAGCTTC AGGGCATCAT CACCTGGTTC GACAATTTCT CGCTGCTGCT ACGGCGCGAC GGCCAGTCGC AACTGGTGTA CAAGCACGCG ATTTCGACCG TGATGCCTTC GCATGATTTC GACCTGTCGC TGCTCGGCGG CAACCTGCGC GACGCGCCGG CGAGCAAGGG CAAAGCGCTG CAGGATGTAT TCCTCAACGC CGTTCGTCGC TCGGATGAGT CGGTGACGAT GTTCCTCGTC AACGGCGTCA TGTTGCAGGG CGACATTGTG GCATTCGACC TGTTCTGCAT GTTGCTCGAA CGTGAGCGAC AGGTCCAGCT TGTTTACAAG CACGCGATTT CGACGGTCCA GCCCAACGGT CCCATCAACC TGACCGACAA TGGCGACGAC GAAGCGGCGG AAGACAGCTG A
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Protein sequence | MPHIASKKKV LKAGKPAPCP RFHRQEQEAN VSDKNQNLQD IFLNALRKSK TPVTMFLVKG VKLQGIITWF DNFSLLLRRD GQSQLVYKHA ISTVMPSHDF DLSLLGGNLR DAPASKGKAL QDVFLNAVRR SDESVTMFLV NGVMLQGDIV AFDLFCMLLE RERQVQLVYK HAISTVQPNG PINLTDNGDD EAAEDS
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