Gene Sala_1130 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSala_1130 
Symbol 
ID4081490 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingopyxis alaskensis RB2256 
KingdomBacteria 
Replicon accessionNC_008048 
Strand
Start bp1169026 
End bp1170063 
Gene Length1038 bp 
Protein Length345 aa 
Translation table11 
GC content67% 
IMG OID638009491 
ProductFlp pilus assembly CpaB 
Protein accessionYP_616179 
Protein GI103486618 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3745] Flp pilus assembly protein CpaB 
TIGRFAM ID[TIGR03177] Flp pilus assembly protein CpaB 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.0287562 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.522315 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATACGC GAAAGATTAT GCTGATCGTC GGCGCGCTGG TGATTGCCAT CGGCGCGGCA 
TTCGGGGTCA ACTATATGAT GCGCGGAGCG GGGGCTCCCG CCGCACGGGC GGCCGCGGCG
CCCGAGATCA CGGGACCGAT GATCCTGGTC GCGACGAGGC AATTGCCCGT CGGCACGATC
GTCGGGCCGG ACAGTTTCCG GTTCCAGCCC TGGCCAAAAG ATCTCGTCGA GAACGCCTAT
TTCGTGAAGG AAAAAACCGA CGTGAACACG TTGGTCGGTA CCGTCGTGCG CCATCCGATC
ACGGCAGGAC AGCCGCTCAC GCAGGGTGCC CTCGTCCATC CCAACGATCG CGGCTTCCTT
GCCGCGGCGC TCGGGCCCGG TATGCGGGCG ATCACCGTCA AGGTGTCGCA GGAACAGGGC
GTCGCGGGTT TCGTCTTTCC CGGCGACCGC GTCGACGTGG TGCTGACGCA GACGATCGAG
GTCGAGGAAG GCAGCACCTA TCCCGACGAC CAGATCTTCA CCGCCGAGAC CATCGTTCGC
AACATCCGCG TGCTGGCAAC CGACCAGCGC TATGACGCAG AGGACGAGAC GGGCAAGACG
CCGGTGCGCA CCTTCGGTTC GGTGACGCTC GAAGCGACGC CGGAGATTGC CGAAAAAATC
GCCGTCGCAC AGGGCATGGG CCGCCTGTCG CTCGCGCTCC GCCCGCTGGC CGAAAGCGCC
GGCGAACTCG ACGCCGCGAT CGCTTCGGGT GAAATCAACG TTCCGGCTTC GGGGGGCACC
GCTGCCGAAA GGAAGATGCT GGCGCAGGCC GCCGCGCGTC CGGTTGCCAG CCGTTCGTCG
GCGACCACCG GTGGCGACGT GTCGCGCTTC TGGATCCCGG TACGCGGGCG CGTCACTGCG
CCGCGTCCGC AGCAGGCAGA CAACAGGGGT GGTTATGCGC CGGCCAATGA CGGTCGCGGA
GTGTCCGCGC CGACCGGCCC GGTCGTGCGC GTGACCCGCG GCGACAAGAT GACCGAAGTT
CCGGTTGGGG GTAAGTAA
 
Protein sequence
MDTRKIMLIV GALVIAIGAA FGVNYMMRGA GAPAARAAAA PEITGPMILV ATRQLPVGTI 
VGPDSFRFQP WPKDLVENAY FVKEKTDVNT LVGTVVRHPI TAGQPLTQGA LVHPNDRGFL
AAALGPGMRA ITVKVSQEQG VAGFVFPGDR VDVVLTQTIE VEEGSTYPDD QIFTAETIVR
NIRVLATDQR YDAEDETGKT PVRTFGSVTL EATPEIAEKI AVAQGMGRLS LALRPLAESA
GELDAAIASG EINVPASGGT AAERKMLAQA AARPVASRSS ATTGGDVSRF WIPVRGRVTA
PRPQQADNRG GYAPANDGRG VSAPTGPVVR VTRGDKMTEV PVGGK