Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sala_1126 |
Symbol | |
ID | 4081486 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingopyxis alaskensis RB2256 |
Kingdom | Bacteria |
Replicon accession | NC_008048 |
Strand | - |
Start bp | 1164582 |
End bp | 1165514 |
Gene Length | 933 bp |
Protein Length | 310 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 638009487 |
Product | type II secretion system protein |
Protein accession | YP_616175 |
Protein GI | 103486614 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4965] Flp pilus assembly protein TadB |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.0371029 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.497639 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCTTTTG CGGTTCTTGC GATCCTGCTT CAGGGTCCGT CGGCGGGCAA GGCAAAGTCG CGGCGGCTGG CGATGGTCAA GGATCGCCAT GCCGCTTCGA CCGAGGCAGT CGTCGCGGCG CAGATGCGCA AAACCATCCA GTCGGTGGGA CGCCGGGGCA ACTCGTCGCT GACCAGCCTG CTTCCCCGCC GCGAGGAACT CGAAAAGCGC ATCCGGCGGA CAGGCAAGAG CTGGACGCTT ACCCAATATA TGTTCGCCTC CATGGGACTG TTTGTCGTGG CGACCGGCGC GATGCTGATC GTCCGCGCCC CGTTCCCGAT GGCCGCGCTC GTCGGACTGC TGATCAGCCT TGGCCTGCCC TATCTGGTCG TCGGCATGGC GATCAAGAAG CGCGTCGCAC AATTCAATGC GCGCTTTCCC GATGCGATCG ACCTGCTGGT GCGCGGGCTG CGGTCGGGCC TGCCGGTGAC CGAGACCTTC CAGGTCGTCA GCCAGGAACT GCCCGGCCCT GTCGGCGAGG AGTTCAAAGG CGTCGTCGAG CGGATCCGGA TCGGTAACAC GATGGAGGCG GCGCTTCAGG AAACGGCCGA AATGCTCGGC ACGCCCGAGT TCCAGTTCTT CTGCATCACC ATCCAGATCC AGCGCGAGAC GGGCGGCAAC CTTGCGGAAA CACTGGCCAA CCTGTCGGAC GTGCTGCGCA AACGTGCGCA AATGAAGCTG AAGATCCGCG CAATGTCATC GGAAGCCAAG GCGTCGGCCT ATATCGTCGG CGCGCTTCCC TTTTTCGTCT TCGGCGTCGT GTGGACGGTG AACCCCAGCT ATCTTGCGGG TTTCTTCGTC GAACAACGCC TGATCGTCGC CGGGATCGGC GGGCTGATCT GGATGAGCAT CGGGGCCGGA ATCATGGCCA AGATGGTCAA TTTCGAGATT TGA
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Protein sequence | MAFAVLAILL QGPSAGKAKS RRLAMVKDRH AASTEAVVAA QMRKTIQSVG RRGNSSLTSL LPRREELEKR IRRTGKSWTL TQYMFASMGL FVVATGAMLI VRAPFPMAAL VGLLISLGLP YLVVGMAIKK RVAQFNARFP DAIDLLVRGL RSGLPVTETF QVVSQELPGP VGEEFKGVVE RIRIGNTMEA ALQETAEMLG TPEFQFFCIT IQIQRETGGN LAETLANLSD VLRKRAQMKL KIRAMSSEAK ASAYIVGALP FFVFGVVWTV NPSYLAGFFV EQRLIVAGIG GLIWMSIGAG IMAKMVNFEI
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