| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_1024 |
|---|
| Symbol | |
|---|
| ID | 4082307 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingopyxis alaskensis RB2256 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008048 |
|---|
| Strand | - |
|---|
| Start bp | 1057627 |
|---|
| End bp | 1058655 |
|---|
| Gene Length | 1029 bp |
|---|
| Protein Length | 342 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 638009384 |
|---|
| Product | LacI family transcription regulator |
|---|
| Protein accession | YP_616074 |
|---|
| Protein GI | 103486513 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1609] Transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAACAT TGAGGGACGT CGCCCGCGAA GCAGGAGTTT CGGTCGCGAC CGCATCGCGC
GCGATCAACG GTCTGGGCAA TGTCACCGCG CCGACGCGCG CGGCGGTGAT GGCGGCGGTA
AAGAAGCTCA ATTTCGTGCC GCACAGCGGC GCGCGCAGCC TGACGCGGCG CAGGACCGAC
ACTGTCGGGG TCATCCTGCC CGACCTGTTC GGCGAGTTCT TCTCCGAGAT CATTCGCGGT
ATCGACCTCG TTGCGCATGA ATCGGGGATG CACCTGCTGC TCGGCAACAT GCACGGCAGC
ACGCACGAAA CCGCCGCTGC GATCGCGGCG ATGCGCGGCC GCGTCGATGG CCTGCTCGTG
ATGCCGCCGG ACCTCAAGCC CGAACTGCTC GCCGACTATC TCGACCCCGC GCTGCCGACG
GTGCTGCTCA ATTACGACGC CGGGCCGCTC GATCTTCCCT TCGTCGCGGT CGACAATTAT
CAGGGCGCCT ATCGGATGAC CGAAGCGCTG CTGGCGCGCG GCGCGAAACA GGTGGTCCAC
ATCGCCGGCC CCAAGCATAA TCGCGACGCG CGCGACCGCC AGCGCGGCTT CACCGATGCG
ATGGCGAAAA TCGGCGGCGT CCGCACGCCG GCAATCCTGC CGGGCGACTT TTCCGAGGAA
AGCGGCGCGC AGGCGGCGCG GCTGCTGGTG CAGGGCCAAT TGCCCGCCGA CGCGGTGTTC
GCGGCCAACG ACCAGATGGC GGTCGGGCTG ATCGCGGGGC TGGCCGAAGC GGGCAAGTCG
GTGCCGAGCG ACATCATGGT CGCGGGCTTC GACGATATTC CGCTCGCGCG TCACCTCAAC
CCGTCGCTTT CGACGATGCA GGTGCATATC GACCGGTTGG GATCGACCGC GATGATGCTG
CTGCTGCGCA TGTTGCGCGG CGAAACGCTT GGCGCGGCGA ACGCGACGAT CCTGACCCCC
GAGTTGGTCA TCCGCGGGAC GACGGGCGGT GAAACCGCGC CCGTACCCAG CAGCGGGGCG
CGCCCGTGA
|
|---|
| Protein sequence | MATLRDVARE AGVSVATASR AINGLGNVTA PTRAAVMAAV KKLNFVPHSG ARSLTRRRTD
TVGVILPDLF GEFFSEIIRG IDLVAHESGM HLLLGNMHGS THETAAAIAA MRGRVDGLLV
MPPDLKPELL ADYLDPALPT VLLNYDAGPL DLPFVAVDNY QGAYRMTEAL LARGAKQVVH
IAGPKHNRDA RDRQRGFTDA MAKIGGVRTP AILPGDFSEE SGAQAARLLV QGQLPADAVF
AANDQMAVGL IAGLAEAGKS VPSDIMVAGF DDIPLARHLN PSLSTMQVHI DRLGSTAMML
LLRMLRGETL GAANATILTP ELVIRGTTGG ETAPVPSSGA RP
|
|---|
| |