Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sala_0980 |
Symbol | |
ID | 4079979 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingopyxis alaskensis RB2256 |
Kingdom | Bacteria |
Replicon accession | NC_008048 |
Strand | - |
Start bp | 1005177 |
End bp | 1007054 |
Gene Length | 1878 bp |
Protein Length | 625 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 638009340 |
Product | DNA primase |
Protein accession | YP_616030 |
Protein GI | 103486469 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0358] DNA primase (bacterial type) |
TIGRFAM ID | [TIGR01391] DNA primase, catalytic core |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.416677 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCCTCA CCCCGCAATG GCTTGACGAA CTGCGCTCGC GGATCACGCT GTCGACCCTC ATCGGGCGCA CTGTGAAGAT CACGCGCGCG GGCCGCGAGT ATAAGGCCTG CTGCCCCTTC CATAACGAAA AGACGCCCAG CTTCACGATC AACGATGAAA AGGGCTTCTA TCACTGCTTC GGCTGCGGCG CGCATGGCGA TGCGATCCGC TGGATGACCG ACCAGCGCGG CCTCAGCTTC ATGGATGCGG TGAAGGAGCT TGCCGCCGAA GCGGGGATGG AGGTTCCCGC CCCCGACCCG CGTGCCGCGA AAAAGGCCGA AGAACAGGCA AGTCTGCGCG ACGTGATGCA GGCCGCGGCC GAATGGTTCG CGCAGCAGCT TGGCAGCAGC AACGGCGCCC CGGCGCGCGA ATATCTCGCC AAGCGGGGTA TTTCGGAAGC GACGCGCAAG GCCTTCGGCT TCGGCCTTGC GCCCGACAGC CGCAGTGCGC TGAAGGAGGC GCTCAAGACG TTCCCGACCG CGATGCTCGT CGAGGCGGGG ATGCTGATCG CCGTCGATGA CAAGGAGCCC TACGACCGTT TCCGTGGGCG GCTGATGATC CCGATCCGTG ATGCGCGCGG GCGCGTCATC GCCTTTGGCG GACGCATCCT TGGCGACGGC GAGCCCAAAT ATCTGAACTC GCCCGACACG CCGCTCTTCG ACAAGGGGCG CACGCTCTAC AATCTCGACA AGGCAAGCCC CGCATCGCGG CGGACGAACC GCATCGTCGT CGTCGAAGGC TATATGGACG TCATCGCGCT GGCGGAAGCG GGGATCACCG ACGCGGTCGC GCCGCTCGGC ACCGCGCTCA CCGAGAACCA GCTCGCGATG CTGTGGCGCA TGGTGCCCGT GCCCATCCTC TGTTTCGACG GCGACAGCGC GGGGCAGAAA GCGGCAATGC GCGCCGCGAT GCGCGCGCTG CCGCTGCTCC GCCCCGGCTT CAGCCTCGCC TTTGCGACGC TGCCGGCTGG GCAGGACCCC GACGACCTGG TGCGCGCCAA GGGCGCCGAG GGCTTCGCGG CGATCCTGGA GGATGCGCAG CCGCTCGTCG AGCGCCTGTG GGCGCATGAG GTCGCCGCGG GGCCGCTCGC GACGCCCGAG GAGCGGGCGG CGCTCAAGAC GCGGCTGTTG GCGCACGCAG ACGTGATCGA GGATGCCGAT GTGCGCCACC ATTATCGCGA GGCGTTCCGC GAAAAACTCG ACGCGCTGTT CGCAAGGGCG CCCGCCGGGC GCGGCCCGCG CGTGCCATGG GCGCCGCAGC CGGGGCGCGG CGGTCGGCGC TTCGCGCCCG ACCCGCGGCT CCAGCCGCCG GGCGAGGAGA CACGCGCGCT CGGCCAGACG GGCATCGCGG GCCCGCTCGC CGCGGCGTTG CTCGGCGGCC TGCTCCGCTA TCCGCAAGCG ATCCGGCGCA ACGAAGAGGC GCTGTGCCGC CTCGCCATCC CCGATTCTGG CGACGCCGAA CTGCTCGGGC TGATGCTTGA CATCGCAAAT GCCCGCGAAG GGCTTGATTG CGAGGGGTTG CTTGCCATAT TGGAACCCAT GAAAGTGTAT AATAGGGCGA TGACATTGCT CAGAGCCGAT GGAATGCACT TCTCGTTCAA TCGACGGCTC GAAGGCGAAG AGGTTGATAA GGCGCGCGAG ATCGCGCTGC GCGACCTTGA CGAATATATC GGCGTGCTCG TGACGCAGCC CGAAATCCGT GCCCGGCTGG CCGAGGCGAC CGCGGATTAT ATGCGCACGA TGGACGACGA AGGCCATGCG CGGCAGCAAA AGCTGCGCGC GATGGACGAG GATCTGACCC GCCGCCTGGC CGCGCTGTCC GACAGCCGCA GCCAGTAA
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Protein sequence | MTLTPQWLDE LRSRITLSTL IGRTVKITRA GREYKACCPF HNEKTPSFTI NDEKGFYHCF GCGAHGDAIR WMTDQRGLSF MDAVKELAAE AGMEVPAPDP RAAKKAEEQA SLRDVMQAAA EWFAQQLGSS NGAPAREYLA KRGISEATRK AFGFGLAPDS RSALKEALKT FPTAMLVEAG MLIAVDDKEP YDRFRGRLMI PIRDARGRVI AFGGRILGDG EPKYLNSPDT PLFDKGRTLY NLDKASPASR RTNRIVVVEG YMDVIALAEA GITDAVAPLG TALTENQLAM LWRMVPVPIL CFDGDSAGQK AAMRAAMRAL PLLRPGFSLA FATLPAGQDP DDLVRAKGAE GFAAILEDAQ PLVERLWAHE VAAGPLATPE ERAALKTRLL AHADVIEDAD VRHHYREAFR EKLDALFARA PAGRGPRVPW APQPGRGGRR FAPDPRLQPP GEETRALGQT GIAGPLAAAL LGGLLRYPQA IRRNEEALCR LAIPDSGDAE LLGLMLDIAN AREGLDCEGL LAILEPMKVY NRAMTLLRAD GMHFSFNRRL EGEEVDKARE IALRDLDEYI GVLVTQPEIR ARLAEATADY MRTMDDEGHA RQQKLRAMDE DLTRRLAALS DSRSQ
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