| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_0964 |
|---|
| Symbol | |
|---|
| ID | 4079964 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingopyxis alaskensis RB2256 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008048 |
|---|
| Strand | + |
|---|
| Start bp | 989925 |
|---|
| End bp | 990821 |
|---|
| Gene Length | 897 bp |
|---|
| Protein Length | 298 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 638009325 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_616015 |
|---|
| Protein GI | 103486454 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.468031 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAGGG GATTTTCCGC CGATGACGTA GGGCCGCAAA TCGGGCGGCG CTTTCTGGTC
ACCGGCGCCA ATGCCGGAAT CGGGTTCGAG GTGGCGCGGA CGCTTGCGGC GCGTGGCGCG
CATGTCGTGC TCGCGTGCCG CGATGCGGAA AAGGCCGAGG CCGCGATGGC ACGAATCCGA
AGCGATCGGT CCAAAGCCGA CCTGTCCTTC CTGCGGCTCG ACCTGGCCGA CCTCGACCAG
GTGAAGGAGG CGGCCGCGGC GGTGCTTGCG GGACCGCGGA TCGACGTGCT CGTCAACAAC
GCCGGGGTGA TGATCCCGCC GCGGACGCTG ACCAAGCAGG GCCATGAGTT GCAATTCGGG
GTCAATCATC TGGGCACCTT TGCCTTCACC GGGCTGGTGC ATACCCACAT CGAAGACCGG
ATCGTCATCA CCGGCAGCAT CGCGCACAAG AGCGGCGAGA TGGATTACAG CGACCTGTCG
GCGACCCGCA GCTATCACAA CTGGGCGCGC TATCAGATGA GCAAGCTGGC GAACCTGCTC
CATATGTTCG AGCTCGACCG GCGGCTCAGC GCTGCCGGGC GGGCGACGCA GGCGATCGGA
TGTCATCCCG GCGTCGCACT CACCGAATTG CAGCGGCACC TGCCGTTGCC GCTCCGCTAC
ATGACGCCGC TCGCCGCACC CTTTTTCAAC AGTGCGGCGC AGGGCGCGTG GCCGACCTTG
CAGGCCGCGA CCGGCGCGCA TGTGCAGGGC GGCGACTATC TGGGGCCGCA GGGGCTGGGC
GAAGTTTCGG GGCGGTCGGG CCCGGCGCGC GCGAGCCGCG CGGCGCGCGA TCCGAAACTG
GCGCGCGAGC TGTGGGAGCG GTCGGTCGAA CTGACGGGGG TCGATCCGGG GATTTAG
|
|---|
| Protein sequence | MSRGFSADDV GPQIGRRFLV TGANAGIGFE VARTLAARGA HVVLACRDAE KAEAAMARIR
SDRSKADLSF LRLDLADLDQ VKEAAAAVLA GPRIDVLVNN AGVMIPPRTL TKQGHELQFG
VNHLGTFAFT GLVHTHIEDR IVITGSIAHK SGEMDYSDLS ATRSYHNWAR YQMSKLANLL
HMFELDRRLS AAGRATQAIG CHPGVALTEL QRHLPLPLRY MTPLAAPFFN SAAQGAWPTL
QAATGAHVQG GDYLGPQGLG EVSGRSGPAR ASRAARDPKL ARELWERSVE LTGVDPGI
|
|---|
| |