Gene Sala_0954 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSala_0954 
Symbol 
ID4082453 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingopyxis alaskensis RB2256 
KingdomBacteria 
Replicon accessionNC_008048 
Strand
Start bp978688 
End bp980271 
Gene Length1584 bp 
Protein Length527 aa 
Translation table11 
GC content64% 
IMG OID638009315 
Productamino acid/peptide transporter 
Protein accessionYP_616005 
Protein GI103486444 
COG category[E] Amino acid transport and metabolism 
COG ID[COG3104] Dipeptide/tripeptide permease 
TIGRFAM ID[TIGR00924] amino acid/peptide transporter (Peptide:H+ symporter), bacterial 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.935259 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCAAAG CCTATGCCCA GCACGGGGAT GCCGCCGGGA CGTTTCTCGG CCACCCCAAG 
GGGCTTTTCG TCCTTTTTTT CGCCGAAATG TGGGAGCGTT TTTCCTATTA CGGGATGCGC
GCGCTGCTGA TTTTCTACCT GACGAAGCAC TGGCTGTTCT CGGACAGTGA ATCGGGGGTC
ATCTATGGCG CCTATACCGC GCTCGTCTAC ATCACGCCGG TGCTGGGCGG CTATCTGGCG
GACAAATGGC TGGGGCAGCG CAAGGCAGTG CTCTTCGGCG CCATATTGCT GACCTTCGGC
CATTTCATCA TGGGCTTCGA GGGTGACGGC GGGCAGGATC CCGCCAGCCT CAACATCTTC
TGGCTGGCGC TTGCCTTCAT CATCGTCGGT TCGGGTTTCC TGAAAGCCAA TATCTCGGTG
ATCGTCGGCC AGCTCTATCC GCGCACCGAC GTGCGCCGCG ACGGCGCCTA TACGATTTTC
TATATGGGGA TCAACCTCGG CGCCTTCCTC GGTTCGCTGC TCTGCGGCTA TCTGGGCGAA
ACCTATGGCT GGGCCTATGG CTTCGGCGCC GCGGGCTTCG GGATGCTGCT GGGCCTGATC
GTCTTCATCT GGGGCAAGCC GCTGCTGCTC GGCCGCGGCG AAGCGCCCGA TCCCGCCAGG
CTCGCCGCGC CGGTGATGGG CATCAAGTTC GAATGGCTGC TCTATATCGT CGGTATCCTT
GCCGTCGGCG TCTGCTGGTG GATGGTGCAG AATCAGGCGG TCGTCGGCAC GTTGCTCGGC
GTCGCCGGGG CGATCCTCGT CGCCTATGTC ATCTTCACCG CGGTGGTGAA GCTGCCGTCG
GACGATCGCG ACCGCATCTT TGCCGCCATG TTCCTGATCC TCGGTTCGAT CCTGTTCTGG
GCGTTGTTCG AGCAGGCGGG TTCGTCGCTC AACCTGTTCA CCGATCGCTA TGTCGATCGC
GCCGGGGTGC CCGCGTCGGT GTTCCAGTCG CTCAACGCCG GCTATATCGT CCTGCTGGCG
CCGCTGTTCG CGATGCTGTG GACGTGGCTC GGTCGCCGCA ACATGGAGCC TTCGGCGCCG
GCGAAGTTCG GCCTGGCGAT GCTGCAACTG GGCCTCGGCT TTCTTGTCCT CAAATGGGGC
GCCGAAGCGG TCGGCATGGG CAATGCGACG CCGGTGCTGT TCATCTTCCT GATCTATCTG
CTCCACACGA CCGGCGAACT TTGCCTGTCG CCCGTGGGGC TCAGTGCGAT GAACCGTCTC
GCGCCCGCGC ACATGGCCTC GCTCATCATG GGGACGTGGT TCTTCGCCTC CGCGACCGGC
AATTTTGCCG CTGGCCTGAT CGCCGCGGCG ACGGGCTCCG AAAAGGCGAG CGGCGAGGGT
GCGGGCAAGG CGCTGGTGCT CGATGTCTAT CAGACGATCG GCCTGTGGGC GATCGGCTTT
GGCGTGCTGG TGATCCTCGT GTCGCCGCTG ATCAAGAAGC TGATGCACCT CGATACGCTG
CGCGATGCCG ATGAGCTGGC GGGCAGCAAG GAGCTGGCCG AGCCGCAGGC GGCGGGCGTT
CATCCCGAAC CCAAGGGGGC GTAA
 
Protein sequence
MTKAYAQHGD AAGTFLGHPK GLFVLFFAEM WERFSYYGMR ALLIFYLTKH WLFSDSESGV 
IYGAYTALVY ITPVLGGYLA DKWLGQRKAV LFGAILLTFG HFIMGFEGDG GQDPASLNIF
WLALAFIIVG SGFLKANISV IVGQLYPRTD VRRDGAYTIF YMGINLGAFL GSLLCGYLGE
TYGWAYGFGA AGFGMLLGLI VFIWGKPLLL GRGEAPDPAR LAAPVMGIKF EWLLYIVGIL
AVGVCWWMVQ NQAVVGTLLG VAGAILVAYV IFTAVVKLPS DDRDRIFAAM FLILGSILFW
ALFEQAGSSL NLFTDRYVDR AGVPASVFQS LNAGYIVLLA PLFAMLWTWL GRRNMEPSAP
AKFGLAMLQL GLGFLVLKWG AEAVGMGNAT PVLFIFLIYL LHTTGELCLS PVGLSAMNRL
APAHMASLIM GTWFFASATG NFAAGLIAAA TGSEKASGEG AGKALVLDVY QTIGLWAIGF
GVLVILVSPL IKKLMHLDTL RDADELAGSK ELAEPQAAGV HPEPKGA