| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_0886 |
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| Symbol | |
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| ID | 4082786 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingopyxis alaskensis RB2256 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008048 |
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| Strand | + |
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| Start bp | 891742 |
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| End bp | 894162 |
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| Gene Length | 2421 bp |
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| Protein Length | 806 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 638009247 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_615937 |
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| Protein GI | 103486376 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.0016588 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATATCA ACCACAAGCG TGATGCGTCC CGGATGCTTG CGACCGTCTC GGTCGCCGTC
CTGGCTCTTA CCAGCACGTC TGCCTGGGCG CAGGAAGCTC CCGCTCCGGC TCCGGCGGAC
GAGACGATTT ATACCGATGA TGCGATCGTC GTCATCGGCG TGACCAAACA GAGCGCCAAT
ATTCAGGACA CGCCAATCGC AATTACCGCG TTCAGCGGCG AAATGCTGAC CGAACAGGGA
ATCGGCAAGG TCGAGGACAT TGCGACCTTC ACGCCCGGTT TCAACATTCG CGGGGCGGGC
AATAATCCGA CCGCGCTGAC CCTTTCCATG CGCGGCCAGA TCCAGAACGA CACGCTGGCA
ACGCTGGAAC CGTCGGTCGG CACCTACCTC GACGAAATGT ATGTCGCACG TGCCTATGGC
CTCAATGTCG AACTCGTCGA TGTCGAAAGC GTACAGGTGC TGAAGGGGCC ACAGGGCACG
CTCTTCGGGC GCAACACGTC CGCCGGTGCG GTGCTGATCC AGACGGCCAA TCCGCGCTAT
GACGAGTTTT CCGGCAAGGT GAGCGCCACA TACGGCCGCT TCGACGAGCG CACGGGGCAG
GCGGTGCTCA ATCTCGGCCT GTCGGACAGT CTCGCGATCC GCGGTGCGCT TTATTACCAA
AAGCGCGACG GCTTCAAAAC CGATGTCGAC ACGGGCGCCA AATACGAAGG ACGCGAAACC
TGGAATGGCC GCGTCAAGCT TGGCTGGCGG CCGACCGAGA ATCTGGAAAT CATCCTGTCC
GGCGAATGGT ATGACACCTT CATCGACGGC CCGGCACGCC AGAATCTCTT CTTCAACGCC
CCGCCCAACT TCGGTGCCGC CAAGCCCATC GTCGATGGCA TCGCCGCCGC CGACCGGGCG
CAGTTCGACG GCAATCCGAA CCGCGTTGCC ATCACGCCGC CGGGCGCGGT GCCGGGCGCC
GATCCGCGCG GCATCTTCAA CGATACGCGC ACCCAGACCT ATTCGGCGAA ATTCATTCTC
GACACCAGTT TTGGCCAGAT CCGCTGGATC AACGGCTATC GCGGCGTCCA GAGCGAAAAT
CTGATCGACC TCGACGGCAG CAGCTTTAGG GCGCACTTCA CCGAGGGCCG GCAGGATCTG
AAGCAATATT CGTCCGAGCT GCAACTGACG GGAACGGTGT TTGATGACCG GCTGAATTTC
GCCAGTGGCC TGACCTATTT CCGCGAAACG GGTTTCGACC AGTCCCGTTC GAACCTCTTC
GGCGCCACCT TCGCAGCGGG GCCGACGGTT CCGGCGCAGT TTGTGGGTGC GACGAGCTGG
TCGAACTTCT CGGGTTCGCT CGATAACGAC AGCTTCGGTA TGTATGCCCA GCTCAATTAC
GAGCTGACCG ACGCATTGCG CGTCACAGGC GGTCTGCGTT ACTCGATCGA CGACAAGCGC
GTGACGACCC AGTCGGGCAA TGTCGCGAAC AATACCGATG TCTTTGTCAA TTGCAGCCCG
CCCACGGTGG CCGTGCCTTG TCTGCGCAGC AGTCAGGAAA CCTTCACCAA CCTGTCGTAC
ACCATCGGTG TCGATTATGA CGTGACCCCG GACATCCTGG TCTATGCCAA GCACAGCAAG
GGCTATCGTT CGGGTGCGTT GCAGCTTCGC ACACTGACGC TGGCGGATTC GATCCCGTCG
CAACCCGAAC TGGTCTATGA ACAGGAAGTA GGCATCAAGA CGACCTTCCT CGACGGTCGC
GGCACGTTCA ACATCGCCGG CTATCACAAT GTCGTCAAGG ACGCGCAGCG CAGCCCGGTC
CTGGCGCCGA ACGGTCAGAG CCAGACCGTG ATCGAGAACG CCGACACCGA AACCTGGGGG
CTCGAAGCGG ATGCCTCGAT CGAGGTGGCC GACGGCTTCA CTCTCTTTGC TTCGGGCGCA
CTCACCGATC CCAAATATAC GCGCTACGAA GGCCGCGGCG TCTCCGGCGC GTTCGGCAGC
CAGGTGATCG TGCCGATCGA CAAATCGGAT TATGATTTCG TGGGAATCGT CGAAAAACAG
TTCTCGGTCG GTGCCAATCT GTCGAAGGAT CTGGGCAGCG TCGGCCTCGA CGCCAACGTC
GTCTACGCCT GGCAGGGCAA GATGCCGCAG ATCGAACTTC CCGAAGCGCT GCTCACCTCG
ACGGGCATCG GCGGGCTGGG ACTGACCCCG GCCCAAGCGG CCCAGGTCGC CGCCGTGTCG
GACTCGGGCT CACTCGGCAT TCTTAATGCT CGCGTGGCGC TGAAGTTCGG GCCGGAGAAA
AATTTCGAGC TGGCGCTGTG GGGCAAGAAT CTGACCAACG ATCAGGAGCA GCAATATACG
CTGCTGCTCA GCAACATTTA TATCGGCACC TCCTATAACG AACCACGCAG CTATGGCGTG
ACCGCCAGCT ATAAATTCTA G
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| Protein sequence | MNINHKRDAS RMLATVSVAV LALTSTSAWA QEAPAPAPAD ETIYTDDAIV VIGVTKQSAN
IQDTPIAITA FSGEMLTEQG IGKVEDIATF TPGFNIRGAG NNPTALTLSM RGQIQNDTLA
TLEPSVGTYL DEMYVARAYG LNVELVDVES VQVLKGPQGT LFGRNTSAGA VLIQTANPRY
DEFSGKVSAT YGRFDERTGQ AVLNLGLSDS LAIRGALYYQ KRDGFKTDVD TGAKYEGRET
WNGRVKLGWR PTENLEIILS GEWYDTFIDG PARQNLFFNA PPNFGAAKPI VDGIAAADRA
QFDGNPNRVA ITPPGAVPGA DPRGIFNDTR TQTYSAKFIL DTSFGQIRWI NGYRGVQSEN
LIDLDGSSFR AHFTEGRQDL KQYSSELQLT GTVFDDRLNF ASGLTYFRET GFDQSRSNLF
GATFAAGPTV PAQFVGATSW SNFSGSLDND SFGMYAQLNY ELTDALRVTG GLRYSIDDKR
VTTQSGNVAN NTDVFVNCSP PTVAVPCLRS SQETFTNLSY TIGVDYDVTP DILVYAKHSK
GYRSGALQLR TLTLADSIPS QPELVYEQEV GIKTTFLDGR GTFNIAGYHN VVKDAQRSPV
LAPNGQSQTV IENADTETWG LEADASIEVA DGFTLFASGA LTDPKYTRYE GRGVSGAFGS
QVIVPIDKSD YDFVGIVEKQ FSVGANLSKD LGSVGLDANV VYAWQGKMPQ IELPEALLTS
TGIGGLGLTP AQAAQVAAVS DSGSLGILNA RVALKFGPEK NFELALWGKN LTNDQEQQYT
LLLSNIYIGT SYNEPRSYGV TASYKF
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