| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_0753 |
|---|
| Symbol | |
|---|
| ID | 4081163 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingopyxis alaskensis RB2256 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008048 |
|---|
| Strand | + |
|---|
| Start bp | 759986 |
|---|
| End bp | 761383 |
|---|
| Gene Length | 1398 bp |
|---|
| Protein Length | 465 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 638009111 |
|---|
| Product | glycoside hydrolase family protein |
|---|
| Protein accession | YP_615806 |
|---|
| Protein GI | 103486245 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3507] Beta-xylosidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAATCGA ATCAGCAAAT TGTCGTTGAT GCCGTGGCCG AAGGCGATGG CGTCAGGCTT
TCGATCACAG CCGATGGGCG GACACGTGAA TATACGATCG CAGGCAGCAG CCACGCGGAC
TACCAGGCAT TTTTTTCCCG GCTGGCAGAC GATATCGGCT CACGCGCTCC GCATGTGTTT
GACGGGCCTG GCGTAGAAAC GACCGACTCG GGCGTTTGGA AACCGCTGAT CACCCAGAAT
CTGAGCCCGC TGACCAGCGC CGGCTATGGT GACCCTGCGG TGCTCAAGAC GGACGAAGGT
TATTACCTTG TCGCCACGTC CAACGATGCC CCCGACGCCT TTCCGATTCT GTTCAGTGCC
GATCTCGAAC ATTGGGAGCA TAAGGGATTT GTATTTGCCG AAGGGCATGC GCCCGAATGG
ACTGCGCATG GTCGTCATGT CGGGGATTAT TGGGCACCCG AAATGGCCAG AGTGGGCGAT
GAATACTGGC TGGTGTATAC CGCTCGCCAG CACAACAATG CTCTTGCGAT CGGAATGGCC
AAAAGTAATC ATCCTGAAGG TCCGTGGCGC GACCTCGGGC GACCTCTTAT TGCCGGTTTT
GCTTATAACA CCACAGGAAT GACCCAAGAC GGCACACAGC CGGTCATGAG CGGCGGCGTC
ATCGACAGCC ATATCTTCAT CGACCGAAAT GGCGACCGCT ACCTGTACTG GAAAAGGGAC
ACCAACGGCG TCTGGCCGCG TCCGTTAGCC GGATTGATCG GCAAACGACC CGAACTGATC
GAGCAGCTGT TTTCTGCGCC GGCAGACCGC AAAACGGCGG CCGTCGCCGC CGCTCTGCTT
CCCTTCGCCC AGACACGGCG CCCGATGGAA CGTTTCTTCT TCATGCAGCC GTTGATTGAG
GCGGTGATTG ATAACTGGCG TCATGTGAAG GCGACGCTCG CAAGCTATCC CGATGCATCA
CTGATTTGTG AGGCCATGAG CACACCAATA TACGCTCAGC GAATGTCGGA AACCGGGGAG
TTGGTCGGCG ACAAGACCGT TGTTCTTGTG AACGATCTTG ACTGGGAGGG GCACCTGATC
GAGGGTCCGT GGGTTACGTT GCAGGAAAAT CGATACTGGC TTTTTTACGC CGGAAACGAT
TTCGGCACAC CAGCCTATGG CATCGGTGTC GCGGTTGCCG ACCACCCGCT GGGACCATAT
GAGAAGCAGC CGGAGCCGTT GCTCAGGTCC AGACCCGATT GGTGGGCGCC GGGGCACGCA
TCCGTTGCTT CGGGACTCGA CGGTAAGCCG CAGTTGTTCT TCCATGCGTT TTTTCCGAAC
ACGGGCGGAT ACAACACTTT CAGGGCGCTA TTGACGGCAG AATTAACATT CGACCATAAA
AAGGTAAGCT TGAAGTAA
|
|---|
| Protein sequence | MKSNQQIVVD AVAEGDGVRL SITADGRTRE YTIAGSSHAD YQAFFSRLAD DIGSRAPHVF
DGPGVETTDS GVWKPLITQN LSPLTSAGYG DPAVLKTDEG YYLVATSNDA PDAFPILFSA
DLEHWEHKGF VFAEGHAPEW TAHGRHVGDY WAPEMARVGD EYWLVYTARQ HNNALAIGMA
KSNHPEGPWR DLGRPLIAGF AYNTTGMTQD GTQPVMSGGV IDSHIFIDRN GDRYLYWKRD
TNGVWPRPLA GLIGKRPELI EQLFSAPADR KTAAVAAALL PFAQTRRPME RFFFMQPLIE
AVIDNWRHVK ATLASYPDAS LICEAMSTPI YAQRMSETGE LVGDKTVVLV NDLDWEGHLI
EGPWVTLQEN RYWLFYAGND FGTPAYGIGV AVADHPLGPY EKQPEPLLRS RPDWWAPGHA
SVASGLDGKP QLFFHAFFPN TGGYNTFRAL LTAELTFDHK KVSLK
|
|---|
| |