| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_0374 |
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| Symbol | |
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| ID | 4081961 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingopyxis alaskensis RB2256 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008048 |
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| Strand | - |
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| Start bp | 386090 |
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| End bp | 387613 |
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| Gene Length | 1524 bp |
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| Protein Length | 507 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 638008733 |
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| Product | tartrate/fumarate subfamily Fe-S type hydro-lyase alpha subunit |
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| Protein accession | YP_615430 |
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| Protein GI | 103485869 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1838] Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain
[COG1951] Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain |
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| TIGRFAM ID | [TIGR00722] hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region
[TIGR00723] hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.695152 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACACCG TCATCATTCG CGAAGACGAT CTGATCGAAA CCATCGCCGA CGCGCTTCAG
TACATCAGCT ATTTTCATCC GATGGACTAT ATTCGCGCGC TTGCCGCCGC CTATGAGCGC
GAAGTGTCGC CCGCCGCCAA GGACGCGATG GCGCAGATAT TGTCGAACAG CCGCATGTGC
GCCGAGGGGC ACCGACCGAT CTGTCAGGAC ACCGGCATCG TCACCGTCTT CATCAAATGG
GGCATGGACT GCCGCCTCGA TTCGCCCCGC AGCCTGCAAC AGGTCGTCGA CGAAGGCGTG
CGCCGCGCCT ATCTCCATCC CGAAAACAAG CTGCGCGCCT CGATCCTCGC CGACCCGGCG
TTCAGCCGCG TCAATACGAA GGACAATACG CCGTCGGTGC TCAATGTCGA GATGGTCCCC
GGCAACAAGG TCGTGATCGA CGTCGCCGCA AAGGGCGGCG GCAGCGAAAA CAAGTCGAAG
TTCAAGATGA TGAACCCGTC GGATTCGATC GTCGACTGGG TGCTCGAAAT GGTGCCGCAG
ATGGGCGCCG GCTGGTGCCC GCCGGGGATG CTCGGCATCG GTATCGGCGG AACCGCCGAA
AAGGCGATGC TGCTCGCCAA ACAGTCGCTG ATGGACCCGA TCGACATGAC CGAGCTGCTC
GCGCGCGGCC CGAGCAATCC GACCGAGGAA CTGCGGATCG AACTGTATGA AAAGGTCAAT
GCGCTCGGCA TCGGCGCGCA GGGGCTGGGC GGGCTTTCGA CCGTGCTCGA CGTCAAGATC
GCCGACTGGC CGACCCATGC CGCCTCGAAG CCGGTCGCGA TGATTCCGAA CTGCGCCGCG
ACCCGCCACG CGCACATCAC CCTCGACGGC AGCGGCCCGG CCTATCTCGA ACCGCCGAAA
CTCGCCGATT ACCCGCAGAT CGACTGGAAG CCCGACACCA CGGCGAAGCG CGTCGATCTC
GACCATCTCA CCCCCGAGAT CGTCGCGAGC TGGAAACAGG GCGACCGCCT GCTCTTGAGC
GGCAAGATGC TCACCGGCCG CGACGCCGCG CACAAGCGCA TCGCCGACAT GCTCGCGAAG
GGCGAGCAAT TGCCCGTCGA GTTCAGGGGC CGCGTCATCT ATTATGTCGG CCCGGTCGAC
CCCGTCGGCG AGGAAATCGT CGGCCCCGCC GGCCCGACGA CCGCGACGCG CATGGACAAG
TTCATGGACA TGATGCTGGG TCAGGGCCTG CTCGCCTGCG TCGGCAAGGC CGAACGCGGC
CCCGCCGCGA CGCAATCGAT CGCGAAGCAC AAGAGCGCGT ACCTTATGGC GGTCGGCGGT
GCCGCCTACC TTGTCGCGCG CGCGATCAAG GGCAGCAAGG TGGTGGGCTT CGCCGACCTC
GGCATGGAGG CGATCTACGA GTTCGAGGTG CAGGACTTCC CCGTCACCGT CGCGGTCGAC
AGCGAAGGCC AGAACGTCCA CGTCAACGCG CCGAAGCTGT GGCAAAAGCG GATCAAGGAT
GAGGGGTTGC TGGCGGGGGT GTAA
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| Protein sequence | MNTVIIREDD LIETIADALQ YISYFHPMDY IRALAAAYER EVSPAAKDAM AQILSNSRMC
AEGHRPICQD TGIVTVFIKW GMDCRLDSPR SLQQVVDEGV RRAYLHPENK LRASILADPA
FSRVNTKDNT PSVLNVEMVP GNKVVIDVAA KGGGSENKSK FKMMNPSDSI VDWVLEMVPQ
MGAGWCPPGM LGIGIGGTAE KAMLLAKQSL MDPIDMTELL ARGPSNPTEE LRIELYEKVN
ALGIGAQGLG GLSTVLDVKI ADWPTHAASK PVAMIPNCAA TRHAHITLDG SGPAYLEPPK
LADYPQIDWK PDTTAKRVDL DHLTPEIVAS WKQGDRLLLS GKMLTGRDAA HKRIADMLAK
GEQLPVEFRG RVIYYVGPVD PVGEEIVGPA GPTTATRMDK FMDMMLGQGL LACVGKAERG
PAATQSIAKH KSAYLMAVGG AAYLVARAIK GSKVVGFADL GMEAIYEFEV QDFPVTVAVD
SEGQNVHVNA PKLWQKRIKD EGLLAGV
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