| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_0316 |
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| Symbol | |
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| ID | 4082347 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingopyxis alaskensis RB2256 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008048 |
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| Strand | + |
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| Start bp | 324333 |
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| End bp | 325826 |
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| Gene Length | 1494 bp |
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| Protein Length | 497 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 638008675 |
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| Product | type II secretion system protein E |
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| Protein accession | YP_615372 |
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| Protein GI | 103485811 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
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| TIGRFAM ID | [TIGR02533] general secretory pathway protein E |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.218046 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAGCGACA GCGAACCGGC CGCGCCCGCA GCGGCGCCGG TCGACATCCC CTATGGCTTT
GCGCGCGCAC ACGGTGTCGT CATCGCGCCG GGCGAGGAGG GCGTCTGGCT CGCGACCCTG
CGCGAAGGCA GCGATCCGGC GGTGCTGATC GAGGTCAAGC GCCACCTCGC GCAGCCGCTG
CGCGTCGCGA CCGCCGATGC GGCCGATTTC GACCGGCTGC TGTCCGATCA TTATGCGGTC
GACAGCTCGG CCGCGGCGAT GGCGGGGTCG GTCGGCAGCG ACGGGCTCGA CCTCGGCATC
CCCAGCGCCG AAGACCTGCT CGACAGCGCC GACGACGCCC CCGCGATCCG CCTCATCAAC
GCGATCATCG CCGAAGCGGT GCGGCAGGGG GTCAGCGACA TTCATATCGA ACCCTATGAA
AGCGGGCTGG TCGTGCGGAT GCGCGCCGAC GGCGTGCTGC GCGAGCATCT CAGGATGCCG
CCGCACGTCG CCCCCGTCGT CGTCAGCCGT ATCAAGGTGA TGGCGCGGCT CGACATCGCC
GAACGCCGCG TGCCGCAGGA CGGCCGCATC GGGCTGACGC TCGCGGGGAA AGCGGTCGAT
GTGCGCGTCT CGACCTTGCC GAGCCGCGCG GGCGAGCGCG TGGTGATGCG TATCCTCGAC
AAGGACGCCG CCGGGATCGA CTTCGACATA CTCGGCCTGT CTGGCGAGGC GGACCGGATC
TTGCGCGAGG CGCTGGCCGA ACCCAATGGC ATCATCCTCG TCACCGGGCC GACCGGATCG
GGCAAGACGA CGACGCTCTA TGCGGCCTTG AAGCAATTGA ACGACGGGCA GCGCAATATC
CTGACCGTCG AAGACCCGGT CGAATATGCC GTTGACGGCG TGGGTCAGAC GCAGGTGAAC
AGCAAGGTCG GGCTCGACTT TGCCGCGGGT CTGCGCGCGA TCCTGCGCCA GGACCCCGAT
GTGGTGATGG TCGGCGAAAT CCGCGACCGC GAAACCGCCG ACATCGCGGT GCAGGCCTCG
CTCACCGGCC ATCTCGTGCT CTCGACCGTC CACACCAATG ATGCGGTGGG GGCGATCACG
CGCCTGAAAG ATCTGAAGGT CGAACCCTTC CTGCTCGCCT CGACGCTGCG CGCGGTGATC
GCGCAGCGGC TGGTGCGCAA GCTCTGTGAC AATTGCCGCG AGCCGGTGCA GGCCGACAAC
AGCATTGCCG CGATGCTGGG GCTCGACATC GGCACCGTGA TCTGGCGGCC CAAGGGCTGC
GAGGCGTGCG GGGGCACGGG CTTCAAGGGC CGCATCGGCG TGTTCGAGGC GATCAAGGTC
GACGACACGG TGCGCCGCTA TATCTATGCG GGTGGCGACG AGGCGATGAT CGCGAAGCAC
GCCTTTCTGA AATCGCCGAC GCTGGCGTCC GCAGCGCGGA CGATGGTCGC GAAGGGACTG
ACGACCGCCG AGGAAGCGAT CCGCGTCGCG CGGCGCGAGG ATGTCGATGC CTGA
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| Protein sequence | MSDSEPAAPA AAPVDIPYGF ARAHGVVIAP GEEGVWLATL REGSDPAVLI EVKRHLAQPL
RVATADAADF DRLLSDHYAV DSSAAAMAGS VGSDGLDLGI PSAEDLLDSA DDAPAIRLIN
AIIAEAVRQG VSDIHIEPYE SGLVVRMRAD GVLREHLRMP PHVAPVVVSR IKVMARLDIA
ERRVPQDGRI GLTLAGKAVD VRVSTLPSRA GERVVMRILD KDAAGIDFDI LGLSGEADRI
LREALAEPNG IILVTGPTGS GKTTTLYAAL KQLNDGQRNI LTVEDPVEYA VDGVGQTQVN
SKVGLDFAAG LRAILRQDPD VVMVGEIRDR ETADIAVQAS LTGHLVLSTV HTNDAVGAIT
RLKDLKVEPF LLASTLRAVI AQRLVRKLCD NCREPVQADN SIAAMLGLDI GTVIWRPKGC
EACGGTGFKG RIGVFEAIKV DDTVRRYIYA GGDEAMIAKH AFLKSPTLAS AARTMVAKGL
TTAEEAIRVA RREDVDA
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