| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_0315 |
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| Symbol | |
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| ID | 4082346 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingopyxis alaskensis RB2256 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008048 |
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| Strand | + |
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| Start bp | 322138 |
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| End bp | 324336 |
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| Gene Length | 2199 bp |
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| Protein Length | 732 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 638008674 |
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| Product | type II and III secretion system protein |
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| Protein accession | YP_615371 |
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| Protein GI | 103485810 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.713775 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGTCTCA AACTGTCCCT GATGCTCGCC GCCGCGCTCG TTTCCGCAAC CCCCGTGCCG
GCGGTCGCCC AATATACGCT GAACGTCCGC GACGCCGACA TTCGCGCCTT CATCCAGGAC
GCGGCGCGGA TCACCGGGCG CACCTTCGTC ATCGACGGCC GCGTCAACGG CAAGGTGTCG
GTCGTCACCG ACCGGCCGCT GTCGCGCAGC GAATATTTCG AGATTTTCCT CGCGACCTTG
CGCTCGAACG GGCTGGTCGC GGTGCCGGGG CCGAACGGTG CGTACCGCGT TCAGCCGATC
GACGGCGCGG CGGCGCAGCC GGGCCGGATC GGCAGCGGCG GCGCGGCGCA GAACCAGTTC
GTCACCGAAA TCATCCGCCT GCGTCATATC GACGCGGTCG CCGCGGTCGA AACGCTGCGC
CCGCTGGTCA GCGCGCAGGG CTCGCTCACC GCCAACCGCA ACGCGAACAG CCTGGTGGTC
GCCGATTTTG CCGATAATAT CCGCCGGATC CGGTCGCTCG CGGCGAGCAT CGATCGCGAC
AGTTCGACCA GTCAGATCGT CACGCTGAAA AATGCCGGCG CGCGCGAAAT CGCCGCGGCG
CTCCAGGCGC TCGTCCCGGC GGCGGGCGAG GGTGCGCGCG CGCCGGTCGC GATCGTTCCG
ATCGACAGCA GCAACGCGAT TGCGCTGCGC GGCGATCAGG CGCTCGTGAC GCGCTTCGTC
GCGATGGCGA ACGAGCTCGA CGCCAAGGCG GCGGGTGGCA CCGAGCTGCG CGTCTATTGG
CTCGAACATG CCAATGCCGA AACCTTGCTG CCGACGCTGC AACAGCTGAT CGGCGGCGGC
AGCGACCCGG TGCAAAGGGC GGGCTTGCCG CCTGCATCAT CCTCTTCGTC CGGCGGCGAC
GGCAATGCGG CGCCCGCCGC CGCAGCCCCC GCATCCTCCT CGACCGGCGC CGGGGGCAGC
GGCAGCATCT CGACGCGCGG CCCGGCGATC GTCACGCGCT ACGAGGGCGC CAACGCGATC
ATCGTCGCCG CGAACAGCGA AGTGCAGCGG ATGCTCGGCG AACTGATCCG CCAGCTCGAC
GCGCGGCGCC AGCAGGTGCT GGTCGAGGCG ATCGTCGTCG AAATCGGCGA CGATGCGGCG
AAGCGGCTGG GCGTCCAGTT CCTGCTCGGC GGCAAGAATA TCCCCTTCGT CGCGACGAGC
TACAGCAATG CATCGCCCAA TATCCTGACC CTGGGCGGCG CCTATGCCTC GACGCGGATC
AGCGAAGAGA CGACGACCAC CGACGGCACC ACCGTCGTCA CCCAGACGAC GAGCGCGCTC
GGCGATGCCT TGCAGGAAGC CGCGGCGGCG CAACTGCTGT CGGCAACCGG CGGCTTCGCG
GGCTTTGCGG GCGACATCGG CAAGAACACC ATCTTTGGCG CGATCATCAA CGCGGTGAAG
TCGGACACGA CCTCGAACCT GCTCGCGACG CCGCATATCG TCACGCTCGA CAATCAGCCC
GCCAAGTTCC TCGTCGGGCA GGATGTTCCG ATCACGACCG GCGAACAGCT GGGCGACAAT
TTCGAAAATG CCTTCCGCAC CGTCCAGCGC GAAGAGGTCG GGATCAAACT GGAGGTGACG
CCGCAGGTCA ACGGTGCAGG CGAAGTGAAG ATGTTCCTGC GTCAGGAAGT GTCGAGCGTC
GCCGGTCCTG TTTCGTCGCG CAACAGCGAC CTCATCCTCA ACAAGCGTGC GTTCGAGACG
GTGCTCACCG TCGACGATGG CGAAATCCTG GCGATCGGCG GCCTGCTCAA CGACGACGAG
CGCAGGACGA TCGAGCGTAT TCCGCTTTTG AGCGACATTC CGCTGATCGG CGAACTGTTC
AAATCGCGCA GCCGGACGCG CGCCAAGACC AATTTGATGG TCTTCATCCG CCCGACGATC
CTGAAAAGCC GCGAGGACAA TGCCGCGCTT ACCGCGCGCC GCTATGGCTA TATCCGTAAC
TTCCAGCTCC AGCGGAACCC CGACGTCGAA CCCGCGATCG ACACGCTGGT GCGCGACTAT
ATGGGCGCGA CGCCGCCGTC GCCGCCGACA CCGGACGATG TGACTGTCGG CCCGGTCAAC
CTGCCCCAAC TGCGTGGCAC GGATGGCGCA GTGATCCAGA CCGACGTGCC GCCGTCGGTT
TCGCAGGCCC CCGCCCCTCC CGCCGGAGAC TATCCGTGA
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| Protein sequence | MRLKLSLMLA AALVSATPVP AVAQYTLNVR DADIRAFIQD AARITGRTFV IDGRVNGKVS
VVTDRPLSRS EYFEIFLATL RSNGLVAVPG PNGAYRVQPI DGAAAQPGRI GSGGAAQNQF
VTEIIRLRHI DAVAAVETLR PLVSAQGSLT ANRNANSLVV ADFADNIRRI RSLAASIDRD
SSTSQIVTLK NAGAREIAAA LQALVPAAGE GARAPVAIVP IDSSNAIALR GDQALVTRFV
AMANELDAKA AGGTELRVYW LEHANAETLL PTLQQLIGGG SDPVQRAGLP PASSSSSGGD
GNAAPAAAAP ASSSTGAGGS GSISTRGPAI VTRYEGANAI IVAANSEVQR MLGELIRQLD
ARRQQVLVEA IVVEIGDDAA KRLGVQFLLG GKNIPFVATS YSNASPNILT LGGAYASTRI
SEETTTTDGT TVVTQTTSAL GDALQEAAAA QLLSATGGFA GFAGDIGKNT IFGAIINAVK
SDTTSNLLAT PHIVTLDNQP AKFLVGQDVP ITTGEQLGDN FENAFRTVQR EEVGIKLEVT
PQVNGAGEVK MFLRQEVSSV AGPVSSRNSD LILNKRAFET VLTVDDGEIL AIGGLLNDDE
RRTIERIPLL SDIPLIGELF KSRSRTRAKT NLMVFIRPTI LKSREDNAAL TARRYGYIRN
FQLQRNPDVE PAIDTLVRDY MGATPPSPPT PDDVTVGPVN LPQLRGTDGA VIQTDVPPSV
SQAPAPPAGD YP
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