Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sala_0183 |
Symbol | |
ID | 4082292 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingopyxis alaskensis RB2256 |
Kingdom | Bacteria |
Replicon accession | NC_008048 |
Strand | + |
Start bp | 189531 |
End bp | 191333 |
Gene Length | 1803 bp |
Protein Length | 600 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 638008542 |
Product | alpha amylase, catalytic region |
Protein accession | YP_615240 |
Protein GI | 103485679 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0366] Glycosidases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATGCGCC GCCTCGCCGC GTTCGCGCTG CTGCTCGCGC CGCTCCCCGT CGCGGCGGAC GAGGCGGCGC TGCGCGTCCG CCCCGCAAAC GACGAGATCA TCTATTTCGT GCTTCCCGAC CGTTTCGAGA ATGGCGATGC GTCGAACGAT AGAGGCGGGC TGAAAGGCGA TCGCCTCGCC ACCGGCTATG ACCCCGCGGC GAAGGGCTTT TTTCACGGCG GCGACCTTGC GGGCCTCACG AAGCGGCTGG GCTATATCCA GGGGCTCGGC GCCACGGCGA TCTGGTTCGC CCCCATTTTC AAGAACAAGC CGGTGCAGGG CGCGCCGGGG CAGGAAAGCG CGGGCTATCA CGGCTATTGG GTGACCGACT TCACGCAGGT CGATCCGCAT TTCGGCACGA ATGCGGAGTT CAAGGCCTTT GTCGACGCGG CGCACGCCCG CGGCATGAAG GTCTATATGG ACATCATCGC CAACCACACC GCCGACGTCA TCACCTACAA GGAAGGCGCG GCCACGGATT TCCGCTACCG CAGCCTTGCC GACTATCCCT GGTCGCGCCG CGGCGGGGTC GATGGCCCGG CGATCAACCC CGGCTTTGCC GGCGACGGGG TCGCGAGTGC GGACAATTGG GCAAAGCTCA CCGATCCCGC CTTCGCCTAC ACGCCCGTGG TGCCGAAGGG CGAGGAGCGG GTGAAGGTGC CCGCATGGCT CAACGACCCC ATTTATTATC ACAATCGCGG CAACAGCGAC TGGGTGGGCG AATCCGCCCT CTATGGCGAC TTTGCCGGGC TCGACGATCT GGCGACCGAA AATCCGCGTG TGGTGCAGGG CTTCATCGAC ATCTTCGGTC GCTGGATCGA CGAGTTCGGC ATCGACGGTT TCCGCATCGA CACCGCCAAA CATGTGAACC CGGAGTTCTG GCGCGCCTTC GTCCCCGCGA TGCAGGCGCG GGCGAAGGCG CGCGGTATCC CGAACTTTCA CATCTTCGGC GAAGTCTATA TCGACGGCGT CGATCCGGGG GCGCTCGCCG CCTGGACGCA CAGCGCGGGC CTGCCCGCCG TGCTCGATTT CAGCTTCGCG CGCGCGGTGA TCGACAGCGT CAGCGGGACC AGGGGCACCG ACTTGTTCGC GCGGCTGTTC GACGGTGACG TGCTGTACAA GGGCGGCGCC GACGCGGCGC TCCAACTGCC GACCTTCCTC GGCAATCACG ACATGGGCCG CTTTGCGATG TTCGTGAAAC AGGCGAACCC GGATGCGGAC GACGCCGAAC TGCTCGCGCG GACGATGCTC GGCCATGCGA TGCTGCTGAC GCTGCGCGGG GTGCCGACCA TCTATTATGG CGACGAACAG GGTTTCGTCT CCGACGGCCA CGACCAGCTC GCGCGCGAGG ACATGTTCGC GTCAAAGGTT GCCGTCTATA ACGACAACGA CCTGATCGGC ACCGACGCGA CCACCGCCGA TGCCAATTTC GACACCGCGC ACCCGCTCTA TCGGCATATC GCGGCGCTGG CGGGTATCCG CCGGAGCACC CCCGCGCTGA TGCGCGGCGC AACGAAATTG CGTGCTTTCT CCGACAAGCC CGGTCTGCTC GCGGTGTCGC GCTTCGACCC CGACACGGGG CGCGAGGTCG TGCTCGCCTA TAATACGTCT GCGGCGCCGT TGCGGGCGAC GATCTCCGTC GATATGAAAA GCGCGGCCTT CACCGCGCTC CACGGCGATT GTCCGGCCCG CCCCGTGGCG CCGGGCAGCC TCTCTATTTC TCTCCCCGCC TTCGGCACGC TCATCTGCCA GGCCAGCGAA TAA
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Protein sequence | MMRRLAAFAL LLAPLPVAAD EAALRVRPAN DEIIYFVLPD RFENGDASND RGGLKGDRLA TGYDPAAKGF FHGGDLAGLT KRLGYIQGLG ATAIWFAPIF KNKPVQGAPG QESAGYHGYW VTDFTQVDPH FGTNAEFKAF VDAAHARGMK VYMDIIANHT ADVITYKEGA ATDFRYRSLA DYPWSRRGGV DGPAINPGFA GDGVASADNW AKLTDPAFAY TPVVPKGEER VKVPAWLNDP IYYHNRGNSD WVGESALYGD FAGLDDLATE NPRVVQGFID IFGRWIDEFG IDGFRIDTAK HVNPEFWRAF VPAMQARAKA RGIPNFHIFG EVYIDGVDPG ALAAWTHSAG LPAVLDFSFA RAVIDSVSGT RGTDLFARLF DGDVLYKGGA DAALQLPTFL GNHDMGRFAM FVKQANPDAD DAELLARTML GHAMLLTLRG VPTIYYGDEQ GFVSDGHDQL AREDMFASKV AVYNDNDLIG TDATTADANF DTAHPLYRHI AALAGIRRST PALMRGATKL RAFSDKPGLL AVSRFDPDTG REVVLAYNTS AAPLRATISV DMKSAAFTAL HGDCPARPVA PGSLSISLPA FGTLICQASE
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