Gene Sala_0183 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSala_0183 
Symbol 
ID4082292 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingopyxis alaskensis RB2256 
KingdomBacteria 
Replicon accessionNC_008048 
Strand
Start bp189531 
End bp191333 
Gene Length1803 bp 
Protein Length600 aa 
Translation table11 
GC content66% 
IMG OID638008542 
Productalpha amylase, catalytic region 
Protein accessionYP_615240 
Protein GI103485679 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0366] Glycosidases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATGCGCC GCCTCGCCGC GTTCGCGCTG CTGCTCGCGC CGCTCCCCGT CGCGGCGGAC 
GAGGCGGCGC TGCGCGTCCG CCCCGCAAAC GACGAGATCA TCTATTTCGT GCTTCCCGAC
CGTTTCGAGA ATGGCGATGC GTCGAACGAT AGAGGCGGGC TGAAAGGCGA TCGCCTCGCC
ACCGGCTATG ACCCCGCGGC GAAGGGCTTT TTTCACGGCG GCGACCTTGC GGGCCTCACG
AAGCGGCTGG GCTATATCCA GGGGCTCGGC GCCACGGCGA TCTGGTTCGC CCCCATTTTC
AAGAACAAGC CGGTGCAGGG CGCGCCGGGG CAGGAAAGCG CGGGCTATCA CGGCTATTGG
GTGACCGACT TCACGCAGGT CGATCCGCAT TTCGGCACGA ATGCGGAGTT CAAGGCCTTT
GTCGACGCGG CGCACGCCCG CGGCATGAAG GTCTATATGG ACATCATCGC CAACCACACC
GCCGACGTCA TCACCTACAA GGAAGGCGCG GCCACGGATT TCCGCTACCG CAGCCTTGCC
GACTATCCCT GGTCGCGCCG CGGCGGGGTC GATGGCCCGG CGATCAACCC CGGCTTTGCC
GGCGACGGGG TCGCGAGTGC GGACAATTGG GCAAAGCTCA CCGATCCCGC CTTCGCCTAC
ACGCCCGTGG TGCCGAAGGG CGAGGAGCGG GTGAAGGTGC CCGCATGGCT CAACGACCCC
ATTTATTATC ACAATCGCGG CAACAGCGAC TGGGTGGGCG AATCCGCCCT CTATGGCGAC
TTTGCCGGGC TCGACGATCT GGCGACCGAA AATCCGCGTG TGGTGCAGGG CTTCATCGAC
ATCTTCGGTC GCTGGATCGA CGAGTTCGGC ATCGACGGTT TCCGCATCGA CACCGCCAAA
CATGTGAACC CGGAGTTCTG GCGCGCCTTC GTCCCCGCGA TGCAGGCGCG GGCGAAGGCG
CGCGGTATCC CGAACTTTCA CATCTTCGGC GAAGTCTATA TCGACGGCGT CGATCCGGGG
GCGCTCGCCG CCTGGACGCA CAGCGCGGGC CTGCCCGCCG TGCTCGATTT CAGCTTCGCG
CGCGCGGTGA TCGACAGCGT CAGCGGGACC AGGGGCACCG ACTTGTTCGC GCGGCTGTTC
GACGGTGACG TGCTGTACAA GGGCGGCGCC GACGCGGCGC TCCAACTGCC GACCTTCCTC
GGCAATCACG ACATGGGCCG CTTTGCGATG TTCGTGAAAC AGGCGAACCC GGATGCGGAC
GACGCCGAAC TGCTCGCGCG GACGATGCTC GGCCATGCGA TGCTGCTGAC GCTGCGCGGG
GTGCCGACCA TCTATTATGG CGACGAACAG GGTTTCGTCT CCGACGGCCA CGACCAGCTC
GCGCGCGAGG ACATGTTCGC GTCAAAGGTT GCCGTCTATA ACGACAACGA CCTGATCGGC
ACCGACGCGA CCACCGCCGA TGCCAATTTC GACACCGCGC ACCCGCTCTA TCGGCATATC
GCGGCGCTGG CGGGTATCCG CCGGAGCACC CCCGCGCTGA TGCGCGGCGC AACGAAATTG
CGTGCTTTCT CCGACAAGCC CGGTCTGCTC GCGGTGTCGC GCTTCGACCC CGACACGGGG
CGCGAGGTCG TGCTCGCCTA TAATACGTCT GCGGCGCCGT TGCGGGCGAC GATCTCCGTC
GATATGAAAA GCGCGGCCTT CACCGCGCTC CACGGCGATT GTCCGGCCCG CCCCGTGGCG
CCGGGCAGCC TCTCTATTTC TCTCCCCGCC TTCGGCACGC TCATCTGCCA GGCCAGCGAA
TAA
 
Protein sequence
MMRRLAAFAL LLAPLPVAAD EAALRVRPAN DEIIYFVLPD RFENGDASND RGGLKGDRLA 
TGYDPAAKGF FHGGDLAGLT KRLGYIQGLG ATAIWFAPIF KNKPVQGAPG QESAGYHGYW
VTDFTQVDPH FGTNAEFKAF VDAAHARGMK VYMDIIANHT ADVITYKEGA ATDFRYRSLA
DYPWSRRGGV DGPAINPGFA GDGVASADNW AKLTDPAFAY TPVVPKGEER VKVPAWLNDP
IYYHNRGNSD WVGESALYGD FAGLDDLATE NPRVVQGFID IFGRWIDEFG IDGFRIDTAK
HVNPEFWRAF VPAMQARAKA RGIPNFHIFG EVYIDGVDPG ALAAWTHSAG LPAVLDFSFA
RAVIDSVSGT RGTDLFARLF DGDVLYKGGA DAALQLPTFL GNHDMGRFAM FVKQANPDAD
DAELLARTML GHAMLLTLRG VPTIYYGDEQ GFVSDGHDQL AREDMFASKV AVYNDNDLIG
TDATTADANF DTAHPLYRHI AALAGIRRST PALMRGATKL RAFSDKPGLL AVSRFDPDTG
REVVLAYNTS AAPLRATISV DMKSAAFTAL HGDCPARPVA PGSLSISLPA FGTLICQASE