Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sala_0084 |
Symbol | |
ID | 4082059 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingopyxis alaskensis RB2256 |
Kingdom | Bacteria |
Replicon accession | NC_008048 |
Strand | - |
Start bp | 89025 |
End bp | 89618 |
Gene Length | 594 bp |
Protein Length | 197 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 638008445 |
Product | TetR family transcriptional regulator |
Protein accession | YP_615143 |
Protein GI | 103485582 |
COG category | [K] Transcription |
COG ID | [COG1309] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 0.382504 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.519853 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGTTACTA CAAATAGATC CCGCACGCGT GGCCGTCCAC GTAAGTTCGA TCCCGAGGCA GCGGTGGCGA CTGCGCAGCA ACTTTTCCAT GAACGCGGTT ATGACGCCGT CAGCGTCGCC GATGTCACCG ACGCGCTCGG CATCAATCCG CCAAGCTTTT ACGCCGCTTT CGGCAGCAAA GCCGGACTTT ACCAGCGCGT GCTCGATTAT TGGACGGACA CCGAAGCGAT TCCGCTCGCG GACATTCTGC GTCCCGACGT CCCCGTCGCC GATGCCGTTG CGGCTATGCT GGAGGAGGCC GCGCGTCGCT ATGCGTTCAA CCCGGCGGCA GGCGGGTGCC TTGTACTCGA AGGCACGCGT TGCAACGACG ACGATGCGCG CGAAGCCGCT CGCGCGCTCA ACCTCGGTGC GGAAACGTTC ATCCATGACT ATATCGCGGC GCGCCATCCG GAGGCGGCCG ATCAAGTGAC CGATTTTGTC GCCACGACGA TGTCCGGGCT TTCGGCAAAG GCGCGAAGCG GACACGACCT ATCGCGCCTC CTCGCTACAG CGCGGCTTGC AGGCAGCGTT CTCACGCAGG TGCTGCCGGC TTGA
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Protein sequence | MVTTNRSRTR GRPRKFDPEA AVATAQQLFH ERGYDAVSVA DVTDALGINP PSFYAAFGSK AGLYQRVLDY WTDTEAIPLA DILRPDVPVA DAVAAMLEEA ARRYAFNPAA GGCLVLEGTR CNDDDAREAA RALNLGAETF IHDYIAARHP EAADQVTDFV ATTMSGLSAK ARSGHDLSRL LATARLAGSV LTQVLPA
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