Gene Sala_0045 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSala_0045 
Symbol 
ID4081538 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingopyxis alaskensis RB2256 
KingdomBacteria 
Replicon accessionNC_008048 
Strand
Start bp46087 
End bp46947 
Gene Length861 bp 
Protein Length286 aa 
Translation table11 
GC content70% 
IMG OID638008405 
Productpyrroline-5-carboxylate reductase 
Protein accessionYP_615104 
Protein GI103485543 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0345] Pyrroline-5-carboxylate reductase 
TIGRFAM ID[TIGR00112] pyrroline-5-carboxylate reductase 


Plasmid Coverage information

Num covering plasmid clones31 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.318936 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGCCAACAA TAAATGAAGA CCAGGGGATC ATGACGAAGA GATTGAAGGA TTTTCAGGGC 
CGGATGCTGC TGGTCGGGTG CGGCAACATG GCCGGCGCGA TGCTCGATCG CTGGCTGGCA
TCGGGGCTGG GCGCGGACCG CGTTGCGATC GTCGATCCGC TTGCCGCGCC GCGCGAGGGC
GTCGTTCAGT TCGCGTCGCT TGCCGAATGG TGCGCCGCGG GCGGCGGCGC CGACTGGATC
ATGCTGGGCA TGAAGCCGCA GCAGCTTGGC GAGGTGGCGG GCGACCTTGC CGACGTCGTC
ACCGGCGACA CGCACCTCCT CTCGATCCTC GCGGGCGTTT CGCTCGCCGA CCTTGCCGCG
CGCTTTCCGG CTGCAAAGGC GCAGGTGCGT ATCCTGCCCA ATCTCGCCGC GCGCATCGGC
GCGGGCGTGT CGGCGGTGGC GAGCAGCGGC GAGGCCGACA TGGCGGCGGT CACCGCATTG
CTCGACCCGC TCGGCACCAT TGTCGCGCTG GCTGACGATT CGACGATGGA CCTCGTCACG
GCCTTTACCG GAAGCGGTCC CGCGTTCGTG TTTCGCCTGA TCGAATCCTA TGCGGCGGCG
GGCGAGCGGC TGGGGCTGTC GGCGGAGGAC GCGCTCAAAC TTGCCACCGC GACCTTCGGC
GGCGCCACCG CGCTGCTCGC CGACAGCGGC GAAAAGCCCG GCACGCTCAT CGCACAGGTG
GCGAGCAAGG GCGGCACCAC ACAGGCGGGG CTCGACGTGC TCGACAGCGA CGGCCAGCTC
GCCGCGCTGC TCACCAATGT CCTGCGCGCG GCGCGCGATC GCGGGCGCGA GCTTGCCGAG
ATCGCACGCG GCGAGGGCTG A
 
Protein sequence
MPTINEDQGI MTKRLKDFQG RMLLVGCGNM AGAMLDRWLA SGLGADRVAI VDPLAAPREG 
VVQFASLAEW CAAGGGADWI MLGMKPQQLG EVAGDLADVV TGDTHLLSIL AGVSLADLAA
RFPAAKAQVR ILPNLAARIG AGVSAVASSG EADMAAVTAL LDPLGTIVAL ADDSTMDLVT
AFTGSGPAFV FRLIESYAAA GERLGLSAED ALKLATATFG GATALLADSG EKPGTLIAQV
ASKGGTTQAG LDVLDSDGQL AALLTNVLRA ARDRGRELAE IARGEG