| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_0023 |
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| Symbol | |
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| ID | 4082210 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingopyxis alaskensis RB2256 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008048 |
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| Strand | + |
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| Start bp | 17078 |
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| End bp | 18832 |
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| Gene Length | 1755 bp |
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| Protein Length | 584 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 638008383 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_615082 |
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| Protein GI | 103485521 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.0108472 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTGGGG GATGCTCTCC TCTCGCGACG CGCTGCGGTC GGCTCTGGGG CCTGCTTGGC
CTCATGCTGC TCACCATGCC CGCGACACCC GCGCAGGCCC GCGCGCTCGA CGTCGAGCGC
GACCTGTGCC ACGCGGTGAG CGGCACCGCG CTCGGCGACG ATGCGCTGCC GCGCCTGCGC
TTTGCCTGCC GCGGCACCCC CGATGATTAT CAGAAGCAAA GCCTGTGGCT CCGCACCACG
CTCGACGAGC GGCCGGTGCA GGGCGGCCTG GCGCTGATGC TGCACAATTC GCGCTTCGAC
CGGCTGGCGG TCGGCTTTTC CTATGCCGAC GGCACAACAC GCTGGCAGCG GGTGCGCAGC
GGCGATTTCG GATCGCACTG GCGCGCCGGC GGGCAGATCC TGTTCGATGC ACCCCCGCGC
GCTGTGCCGG TAACGGCCGT GACGATGCGT TTCGATGGCC TTGCCGCGCA CCAACTTGTC
CGCGCGCGCA TCCTCCCGGC GGATGAGGCA GGGGTGCAGG CCTCGGGCAT GGCCGCGGCG
ATCGGCGCTG CGCTGACGCT GCTGCTCGTC AGCGGCATTT ACAGCCTGTC GCTCGCGGTT
GCGGTGCGCC GCCAATATCT CGCCTGGCAA GCGGGGTGGT CGGCGACGAT GCTGCTATGG
GGCACGCTCT GGTCGCAGGC GCACCTGGCG CTCCTGCCGA CGATGGCCGG GACGGCGACG
GCGCAAATCT GCACCTTTCT TGCCTGTCTT GCCATTGCGG TGGCGACGGC GAGCGCCGTC
ACCGCGGTCG AGCGCGGCCG GGGCGTGCGG GGCCTCAGGA TCGTCGCATT GCTCCTTGGC
GTCGGCGTCG GTCTGGCGGG CATCCCGCTC GCGCTGATCC GCCGCGGCGA CCTCAGCCTG
CTCGCCGACC TGTTGGGCTT CGCCATCCTC GCCGACCTGA TCGTCGTGGC GATCTATCTC
GCGCTGGCGT GGCGGCGCGG ATCGGTCGAG GCGCGCGACT TTCTGGCGGC GTGGGGGCTG
CCGATGGCGG TGCTGGCGTT CATCCACATC GTCGACGTCA ACAAGGACTT CTGGGGCGGC
GGCTCGCAAT TCGTCATGCT GGTCGCCGCG ACCTGGCAGG CGCTCTGGCT GGCCGCCGCC
GCCACGCGCC GCCTCGCGCA GCTTCGGATC GAGCGCGACC ATGCCCGCGA TGCCGAGGCA
CGGGCGCAGA CGCTGGCGCG CCGCGACCCG CTCACCGGCC TTGCGAACCG GCGCGGCTTC
ATCGACAGCG TCACCCCGCT GCTCGACCGT GCACGCGTCG GCAATCTGCC CGCGGCGCTG
CTGCTCGTCG ATATCGACCG CTTCAAGTCG ATCAACGACA TCCATGGTCA CGAGGCGGGC
GACGCGGTGC TGTGTACGAT CGGACAGCGG ATCGAACGCT GGGAAGGGCC GATGTGTACC
GTCGCGCGGC TGGGCGGCGA GGAGTTCGGC CTGCTGACGA TCGGCATGGA GGGTATTGTC
CTCAGCCGTT TTGCCGAGAG CATCCGGCGC GGCCTTGCCG ACTGCGACCA TAGTGTCATC
GTCGGCGACC GACCGGTGAC GGCCAGTATC GGCGTCGCCG AAGTGCGTCC GGCGTGCGAT
TTCAAGCAGC TCTATCGCGT CGCCGACGAA GCACTTTACG ACGCCAAGCG CGGCGGCCGC
AACAGGGTCA TCGTCCAGCG GTACCGCGAC GGACCGCCGC GCGCGCCAAG CCGCGAGATC
GTGCTGTTGA AATAG
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| Protein sequence | MTGGCSPLAT RCGRLWGLLG LMLLTMPATP AQARALDVER DLCHAVSGTA LGDDALPRLR
FACRGTPDDY QKQSLWLRTT LDERPVQGGL ALMLHNSRFD RLAVGFSYAD GTTRWQRVRS
GDFGSHWRAG GQILFDAPPR AVPVTAVTMR FDGLAAHQLV RARILPADEA GVQASGMAAA
IGAALTLLLV SGIYSLSLAV AVRRQYLAWQ AGWSATMLLW GTLWSQAHLA LLPTMAGTAT
AQICTFLACL AIAVATASAV TAVERGRGVR GLRIVALLLG VGVGLAGIPL ALIRRGDLSL
LADLLGFAIL ADLIVVAIYL ALAWRRGSVE ARDFLAAWGL PMAVLAFIHI VDVNKDFWGG
GSQFVMLVAA TWQALWLAAA ATRRLAQLRI ERDHARDAEA RAQTLARRDP LTGLANRRGF
IDSVTPLLDR ARVGNLPAAL LLVDIDRFKS INDIHGHEAG DAVLCTIGQR IERWEGPMCT
VARLGGEEFG LLTIGMEGIV LSRFAESIRR GLADCDHSVI VGDRPVTASI GVAEVRPACD
FKQLYRVADE ALYDAKRGGR NRVIVQRYRD GPPRAPSREI VLLK
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