| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3023 |
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| Symbol | tdh |
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| ID | 4076596 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | - |
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| Start bp | 3191378 |
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| End bp | 3192424 |
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| Gene Length | 1047 bp |
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| Protein Length | 348 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 638008352 |
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| Product | L-threonine 3-dehydrogenase |
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| Protein accession | YP_615017 |
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| Protein GI | 99082863 |
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| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only |
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| COG ID | [COG1063] Threonine dehydrogenase and related Zn-dependent dehydrogenases |
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| TIGRFAM ID | [TIGR00692] L-threonine 3-dehydrogenase
[TIGR01202] 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.473403 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.701742 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGGCCCA ATACAATGAA AGCCCTAGAG AAATCCAAAC CCCAAGAGGG GCTTTGGATG
GTCCAGGCCC CAGTGCCCGA AATCGGCCCG GATGAGGTCC TGATCAAGAT CAACAAGACC
GGCATCTGCG GTACAGATAT TCACATCTGG AACTGGGATG ATTGGGCTGC GCACACGGTG
CCGGTTCCGA TGATCACGGG TCATGAGTTT GCTGGCGAGA TCGTTGAGCT GGGGCGCAAT
GTGACCGGTC TCACGGTTGG GCAGCGGTGC TCGGGCGAAG GGCATCTGAT TGGTACAGAA
AGCCGTCAAT CGCGGTCAGG CAAGTTTCAC CTTGATCCGG GAACGCGCGG GATTGGGGTC
AACGAGCAAG GAGCCTTTGC GCAATACCTG CGCCTGCCCG CTTTTAACGT GGTGCCGCTG
CCCGATGACA TTCCGGATGA CATCGGCGCC ATCCTCGACC CACTCGGCAA CGCGGTCCAC
ACCGCCTTGA GCTTTGATCT CCTCGGTGAG GATGTGCTCA TTACGGGAGC CGGTCCGATC
GGGATCATGG CGGCCGCCGT GGCACGACAT GCGGGCGCGC GCCATGTGGT GATTACCGAT
GTAAACGCAG ACCGCCTGGC GCTTGCCAGT GAGGTCACAC GCGTGCGCAC GGTCAACGTC
GCCGTCGAGG ATCTCAACGA TGTGATGCAT GAACTTGGCC TCAGGGAAGG GTTTGATGTC
GGCCTCGAGA TGTCCGGCAA TCAACAGGCG CTGGACCAGA TGGTCGAAGC GCTGGTGATG
GGCGGCAAGA TTGCGCTTCT TGGTATTCCC CCGGGCAAAT CCCCCGTCGA CTGGTCTCGG
ATCGTCTTCA AGGCCATCAC CATCAAAGGC GTCTATGGAC GGGAGATGTT CGAGACCTGG
TACAAGATGA TCGCGATGCT GCAAAACGGC CTGGATGTAA GCGGGGTGAT CACCCACCGG
TTTGCGGTCG ATGAGTTTGA ACAAGGCTTT GCCGCCATGA AATCAGGACA AAGCGGCAAG
GTTGTACTCG ACTGGACTGG AGGCTGA
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| Protein sequence | MRPNTMKALE KSKPQEGLWM VQAPVPEIGP DEVLIKINKT GICGTDIHIW NWDDWAAHTV
PVPMITGHEF AGEIVELGRN VTGLTVGQRC SGEGHLIGTE SRQSRSGKFH LDPGTRGIGV
NEQGAFAQYL RLPAFNVVPL PDDIPDDIGA ILDPLGNAVH TALSFDLLGE DVLITGAGPI
GIMAAAVARH AGARHVVITD VNADRLALAS EVTRVRTVNV AVEDLNDVMH ELGLREGFDV
GLEMSGNQQA LDQMVEALVM GGKIALLGIP PGKSPVDWSR IVFKAITIKG VYGREMFETW
YKMIAMLQNG LDVSGVITHR FAVDEFEQGF AAMKSGQSGK VVLDWTGG
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