| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3021 |
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| Symbol | |
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| ID | 4076594 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 3188663 |
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| End bp | 3190258 |
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| Gene Length | 1596 bp |
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| Protein Length | 531 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 638008350 |
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| Product | D-3-phosphoglycerate dehydrogenase |
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| Protein accession | YP_615015 |
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| Protein GI | 99082861 |
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| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
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| COG ID | [COG0111] Phosphoglycerate dehydrogenase and related dehydrogenases |
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| TIGRFAM ID | [TIGR01327] D-3-phosphoglycerate dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.487247 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCCCCA AAGTACTCAT CTCCGACAAA CTCTCGGACG CCGCCGTTCA GATCTTCCGT
GACCGCGGCA TTGACGTGGA TTTCCTACCC GATGTGGGCA AGGACAAGGA AAAGCTGGCT
GAGATCATTG GCCAATATGA TGGCCTCGCG ATCCGCTCCG CCACCAAAGT GACGCCGACC
ATTCTGGAAA ACGCCACCAA CCTAAAGGTG ATTGGCCGCG CCGGGATCGG CACCGACAAC
ATCGACAAGG AAGCCGCGTC GAAAAAGGGT GTGATCGTCA TGAACACTCC CTTCGGCAAC
ATGATCACCA CCGCCGAACA TGCGATTGCG ATGATGTTCG CCGTTGCGCG ACAGGTCCCC
GAGGCCTCTG CCTCGACCCA TGCCGGGAAA TGGGAAAAGT CCAAATTCAT GGGCGTTGAG
CTGACCGGCA AGACCCTCGG TGTTATTGGT GCGGGCAACA TTGGCGGCAT CGTCTGCGAT
CGCGCCCGTG GGCTGAAGAT GAAGGTTGTG GCCTATGATC CGTTCCTATC CGAGGAAAAG
GCCAAGAAGA TGCAGGTCGA AAAGGTCGAG CTGGACGAAC TGCTCGCGCG CGCTGATTTC
ATCACGCTTC ATGTTCCGCT GACCGAGCAG ACCAAGAATA TCCTGAGCCG CGAAAACATC
TCCAAGACCA AGAAAGGCGT GCGCATCATC AACTGTGCCC GTGGCGGTCT GGTGGATGAA
GAAGCCCTGG CCGAAGCCCT GACCTCCGGC CATGTGGCTG GCGCGGCATT TGATGTATTC
TCTGTGGAGC CTGCGAAGGA AAACCCGCTC TTCAACCTGC CCAACGTGGT CTGCACCCCG
CACCTCGGCG CCGCGACGAC CGAGGCGCAG GAAAACGTGG CGCTGCAAGT CGCAGATCAG
ATGGCGAACT ACCTCTTGAC CGGTGCCGTT GAAAACGCGC TCAACATGCC ATCGGTGACG
GCCGAGGAAG CCAAGATCAT GGGGCCGTGG ATCAAACTGG CCGATCATCT CGGGGCCTTT
GCGGGTCAGA TGACCGACGA GCCGATTACT GCGATCAATG TGCTCTACGA TGGTGTGGCA
GCGGATATGA ACCTCGACGC GCTGAACTGC TCGGTGGTTG CAGGCATCAT GAAAAAGGTG
AACCCGGATG TGAACATGGT CTCGGCACCC GTTGTGGCCA AAGAACGCGG CATCCAGATC
TCTACCACCA ATCAGGACAA GTCCGGCTCT TTTGATGGCT ATATCAAGGT GACTGTCGTC
ACGGCAAAAC GCGAGCGCTC TGTCGCAGGC ACCGTGTTCT CGGATGGCAA ACCGCGCTTC
ATCCAGATCA AGGGCATCAA TATCGATGCC GAAGTGGGCG CGCATATGCT CTACACCACC
AACCAGGACG TGCCGGGTAT CATCGGCACC TTGGGTCAGA CTTTGGGCGA TATGGACGTC
AACATCGCGA ACTTTACGCT TGGCCGAAAC GAGGTCGGCG GCGAAGCGAT CGCGCTCCTT
TATGTGGATG CGGAGGTCCC CGCAGACGCG CGTGCCAAGC TGGCAGAGAC CGGTTACTTC
ACCCAGATCA AGCCGCTGGC CTTTGACGTC GCCTGA
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| Protein sequence | MAPKVLISDK LSDAAVQIFR DRGIDVDFLP DVGKDKEKLA EIIGQYDGLA IRSATKVTPT
ILENATNLKV IGRAGIGTDN IDKEAASKKG VIVMNTPFGN MITTAEHAIA MMFAVARQVP
EASASTHAGK WEKSKFMGVE LTGKTLGVIG AGNIGGIVCD RARGLKMKVV AYDPFLSEEK
AKKMQVEKVE LDELLARADF ITLHVPLTEQ TKNILSRENI SKTKKGVRII NCARGGLVDE
EALAEALTSG HVAGAAFDVF SVEPAKENPL FNLPNVVCTP HLGAATTEAQ ENVALQVADQ
MANYLLTGAV ENALNMPSVT AEEAKIMGPW IKLADHLGAF AGQMTDEPIT AINVLYDGVA
ADMNLDALNC SVVAGIMKKV NPDVNMVSAP VVAKERGIQI STTNQDKSGS FDGYIKVTVV
TAKRERSVAG TVFSDGKPRF IQIKGINIDA EVGAHMLYTT NQDVPGIIGT LGQTLGDMDV
NIANFTLGRN EVGGEAIALL YVDAEVPADA RAKLAETGYF TQIKPLAFDV A
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