| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3005 |
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| Symbol | |
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| ID | 4078035 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 3173217 |
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| End bp | 3174740 |
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| Gene Length | 1524 bp |
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| Protein Length | 507 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 638008334 |
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| Product | histidine ammonia-lyase |
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| Protein accession | YP_614999 |
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| Protein GI | 99082845 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2986] Histidine ammonia-lyase |
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| TIGRFAM ID | [TIGR01225] histidine ammonia-lyase |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.36207 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCGAGA TGATCCCGGG CGCCGTGACG CTCGACACTT TGGAACGGAT CTGGCGTCAC
GGCACGCCTG CACGTCTGGC CGATAGCGCG CGTGCAGGTG TCGAGGCCGC TGCCGCGATG
GTGGCAGAGG CCGCAGCGGG TGAAGTGCCC GTTTATGGCA TCAACACTGG TTTTGGCAAA
CTTGCGTCGA CCAAGATCGC GCCGGAGGAT ACTGCGACCC TGCAGCGCAA CCTGATCCTG
AGCCATTCTT GCGGTGTGGG CGAGCCGCTG GCCGAAGACA AAACCCGGTT GATGATGGTG
CTGAAGCTGT TGTCGCTGGG TCGGGGCGCC TCCGGGGTGC GCTGGGCTGT CATTGAGCAG
ATCCAAGAGA TGCTGGCACG CGGGGTGACA CCTGTTGTGC CGTCGCAAGG GTCCGTTGGC
GCCTCTGGTG ATCTTGCCCC GCTTGCCCAC ATGACTGCGG CCATGATCGG CGAAGGCGAG
GCAACAATCG ACGGCGTGCG CCTGCCTGGT GCCGAAGCCT TGAGGCGTGC CGGGTTGGAG
CCGATTGTGC TGGGCCCGAA AGAAGGGCTT GGCCTGATAA ATGGCACGCA GTTTTCCACC
GCTTGCGCGC TCACCGGGTT GTTTGAGGCC CTGGAGATGG CGCGGGCCTC CATGGCGATC
GCGTCTTTGA CAACCGACGC TATCATGGGC TCTACCGCGC CTTTGGTGGC GGATATTCAC
AGCTTGCGCG GCCATGCTGG GCAGATGGAG GTCGCGGCAA CGATGCGCGA CATCATGGCG
GGCTCGGAAA TTCGCGAGAG CCACCGTGAG GGCGACACCC GCGTGCAGGA TCCCTATTGC
ATCCGCTGCC AGCCTCAGGT GGTGGGCGCC GCGCTTGATG TGCTGCGCAT GGCGGCGCGC
ACGCTTGAAA TCGAGGCGAA CGCGGTCACC GACAATCCGT TGGTACTGGT GGAGGCGGGG
CAGATCGTCT CCGGGGGCAA CTTCCATGCC GAATATGTGG GCTTTGCGGC AGATCAGATC
GCGCTCGCCG TGGCTGAGAT CGGCGCGATT GCGCAGCGCC GGGTTGCGCT GATGGTGGAT
CCTACCCTGA GCCACGACCT ACCACCGTTC CTGACGCCGA ACCCCGGCCT CAACTCGGGA
TTCATGATTG CCGAAGTCAC GACTGCGGCG CTCATGAGCG AAAACAAACA TCTGGCCAAC
CCCTGCGTTA CGGATTCCAC ACCGACCTCC GCCAACCAAG AGGACCACGT CTCTATGGCG
GCGCACGGTG CGCTGCGGCT GGCGAAAATG AACGCAAACC TGTCGGTGAT CCTTGGGGTC
GAGATGCTTT GCGCGGCGCA GGGGGTCGAG GCGCGCGCGC CGCTCAAGAC CTCTAGCCGC
TTGCAGAACC TGCTCGACAT GCTGCGCGGC GAGATCCCGA GCCTTGGCGA GGACCGCTAT
CTTGCGCCGG AAATCGAAAC CGCCAGCGCG ATGGTGCGGG CAGGCCGCGT GGCGCAGGCC
GCAGGCGTGG AGGTCAGCAC ATGA
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| Protein sequence | MIEMIPGAVT LDTLERIWRH GTPARLADSA RAGVEAAAAM VAEAAAGEVP VYGINTGFGK
LASTKIAPED TATLQRNLIL SHSCGVGEPL AEDKTRLMMV LKLLSLGRGA SGVRWAVIEQ
IQEMLARGVT PVVPSQGSVG ASGDLAPLAH MTAAMIGEGE ATIDGVRLPG AEALRRAGLE
PIVLGPKEGL GLINGTQFST ACALTGLFEA LEMARASMAI ASLTTDAIMG STAPLVADIH
SLRGHAGQME VAATMRDIMA GSEIRESHRE GDTRVQDPYC IRCQPQVVGA ALDVLRMAAR
TLEIEANAVT DNPLVLVEAG QIVSGGNFHA EYVGFAADQI ALAVAEIGAI AQRRVALMVD
PTLSHDLPPF LTPNPGLNSG FMIAEVTTAA LMSENKHLAN PCVTDSTPTS ANQEDHVSMA
AHGALRLAKM NANLSVILGV EMLCAAQGVE ARAPLKTSSR LQNLLDMLRG EIPSLGEDRY
LAPEIETASA MVRAGRVAQA AGVEVST
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