Gene TM1040_2907 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTM1040_2907 
Symbol 
ID4078585 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRuegeria sp. TM1040 
KingdomBacteria 
Replicon accessionNC_008044 
Strand
Start bp3074527 
End bp3075507 
Gene Length981 bp 
Protein Length326 aa 
Translation table11 
GC content56% 
IMG OID638008236 
Productprolyl aminopeptidase 
Protein accessionYP_614901 
Protein GI99082747 
COG category[R] General function prediction only 
COG ID[COG0596] Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)  
TIGRFAM ID[TIGR01249] proline iminopeptidase, Neisseria-type subfamily 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGACAAAT ACCCGGATCA AAAGCGCGCA GTGCAGTTTC TTTATCCGCC GATCGAGCCT 
TTCGATCAGC GCATGCTGGA TGTGGGGCAA GGTCACAGGA TCTACATGGA GCAATGCGGA
AATCCCGATG GGGTGCCGGT CATTGTCTGC CATGGCGGCC CCGGTGGTGG TACCAGCCCG
GCGATGCGTC GGTATTTTGA TCCAAAGGTC TATCGTATCA TTCTGTTTGA TCAGCGTGGG
TGCGGTCGCT CCAGACCTTA TGCGTCCTGC GAAGACAACA CGACATGGCA TCTGGTCGCG
GATATGGAAC TGATCCGCGA GCTTTTGGAG ATCGACTCTT GGATGCTGTT TGGCGGCAGC
TGGGGTGCAA CATTGGCGCT GATCTATGCG CAGACTCATC CTGAGCGCAC AACGCAGTTG
ATCCTGCGCG GGGTGTTCTT GATGACCGAA GCTGAACTCG ACTGGTTCTA TGGTGGGGGT
GCAGGGAAAT TCTGGCCGGA AACCTGGGCC AAGTTCACCG ATCTCGTGCC CAAGGACGAA
CGGGACGATC TGATTGCGGC TTACCACAAG CGGCTGTTCT CTGGTGATCG CGACGAGGAA
ATCCGCTTTG GTCGTGCTTG GTCGGCCTGG GAAAATGCCT TGGCGTCGGT TTATTCCAAC
GGTTTGTCGG GTGAGAGTCC TGGAGATTAC GCGCGGGCTT TTGCGCGGCT TGAGAACCAC
TATTTCTCCA ATGGTGGCTT CCTGCATATG GATGGACAGA TCCTTGCCAA CATGGGGCGC
ATTGCCCACA TCCCTGGCGT GATCGTGCAG GGGCGGTATG ATATGATTTG CCCGCCGCAA
GCGGCCTACA GCATTCATCA GGCTTGGCCG AACTCCGATC TGATCATGGT ACGAAACGCG
GGACACGCGC TTTCGGAGCC GGGAATCAGC GCGGCTTTGG TCAGATGTAT GGATCAGCTG
GCAGAGGAAA TGACCCAATG A
 
Protein sequence
MDKYPDQKRA VQFLYPPIEP FDQRMLDVGQ GHRIYMEQCG NPDGVPVIVC HGGPGGGTSP 
AMRRYFDPKV YRIILFDQRG CGRSRPYASC EDNTTWHLVA DMELIRELLE IDSWMLFGGS
WGATLALIYA QTHPERTTQL ILRGVFLMTE AELDWFYGGG AGKFWPETWA KFTDLVPKDE
RDDLIAAYHK RLFSGDRDEE IRFGRAWSAW ENALASVYSN GLSGESPGDY ARAFARLENH
YFSNGGFLHM DGQILANMGR IAHIPGVIVQ GRYDMICPPQ AAYSIHQAWP NSDLIMVRNA
GHALSEPGIS AALVRCMDQL AEEMTQ