| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_2864 |
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| Symbol | trmE |
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| ID | 4076398 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 3032719 |
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| End bp | 3034005 |
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| Gene Length | 1287 bp |
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| Protein Length | 428 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 638008193 |
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| Product | tRNA modification GTPase TrmE |
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| Protein accession | YP_614858 |
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| Protein GI | 99082704 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0486] Predicted GTPase |
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| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00450] tRNA modification GTPase TrmE |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.234827 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGAGACGA TCTTTGCGTT GGCCACCGCC CAAGGAAAGG CCGGTGTCGC CGTTATACGT
GTATCCGGTC CGCATGCGAT CGAGATCGGC GAAAAACTAA CGCGCAGGAC GCTACCTGCG
CGAGGTATGA TATTTTCAAA ATTGAAAGAT AGCGCAGGTG AGATCCTTGA TGAGGCTCTG
GTCTTGTCGT TTACGTCACC TGACAGCTTC ACCGGCGAAA ATATCGTAGA GTTTCAATTA
CATGGCAGCA TAGCTGTCGT ATCTGCAGTG ATGTCTGCGA TTGAGGAAAC CGGTGTTGCG
CGTCTTGCGG ACCCCGGAGA GTTTACCCGC CGGGCGTTGG ACAACGGAAA GCTCGATCTA
ACTCAGGTTG AGGGCCTTGC TGATCTTATT GATGCGGAGA CGGAAGCTCA AAGAAAACAG
GCGCAGGTCA TCCTTGCAGG CACACTGGGG GATCTGGCAG ACCGTTGGCG AACAGATCTT
ATTCGTGCGG CGTCCCTGAT TGAGGTTACA ATCGATTTCG CGGACGAAGA AGTACCTGTG
GATGTCACGC CAGAGGTAAA GCAGCTTCTT TCTGGCGTAT TGCACGACAT TGAAAAAGAG
GTCGATGGCG TTGCTATTGC CGAGCGCATT CGCGAGGGTT TTGAAGTGGC TATTGTCGGC
TCGCCCAATG TCGGAAAGTC GACGCTCCTC AATGCGCTTG CTGGGCGCAC CGCAGCGATC
ACATCTGAGT ATGCGGGAAC AACGCGCGAT GTGATCGAGG TTCGAATGGA CCTCGCTGGC
CTACCAGTTA CCTTATTGGA TACGGCCGGA CTGAGAGAGA CTGACGATCA TGTTGAGGGG
ATTGGTATCC GTCTCGCGCA GGAGCGCGCA GAAAGGGCTG ACATCCGCGT ATTCCTGGCC
GAAGAGGATG AGAGTTTCTC AATTCAGATG CGAGAAGGGG ATCTCCGACT GCTTCCGAAG
GCGGATGAGC GACGGTCTGC GAAGGGCGCG ATTTCTGGCA GAACAGGGCA GGGCGTAGAT
GACTTGGTAT CGCGTATATC GGATACCCTT AGAAATCGGA CTGCCCATGA TGGTATTGCG
ACAAGAGCAC GGCATCGGGA GACGATGAAC CGTGCTGTGC TGAGTTTGCG CCAAGCGATT
GAAGTCGTTG AACAGGGGCC CGAGTTTTAT GACCTGGCAG CTGAGGACAT GAGATCGGCG
ATCCGAGCGC TAGAGTTGCT AGTGGGTCGG ATAAATGTAG AGAATCTTCT GGATGAGATT
TTCTCGAGTT TCTGTTTGGG AAAGTAA
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| Protein sequence | METIFALATA QGKAGVAVIR VSGPHAIEIG EKLTRRTLPA RGMIFSKLKD SAGEILDEAL
VLSFTSPDSF TGENIVEFQL HGSIAVVSAV MSAIEETGVA RLADPGEFTR RALDNGKLDL
TQVEGLADLI DAETEAQRKQ AQVILAGTLG DLADRWRTDL IRAASLIEVT IDFADEEVPV
DVTPEVKQLL SGVLHDIEKE VDGVAIAERI REGFEVAIVG SPNVGKSTLL NALAGRTAAI
TSEYAGTTRD VIEVRMDLAG LPVTLLDTAG LRETDDHVEG IGIRLAQERA ERADIRVFLA
EEDESFSIQM REGDLRLLPK ADERRSAKGA ISGRTGQGVD DLVSRISDTL RNRTAHDGIA
TRARHRETMN RAVLSLRQAI EVVEQGPEFY DLAAEDMRSA IRALELLVGR INVENLLDEI
FSSFCLGK
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