| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_2818 |
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| Symbol | tbpA |
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| ID | 4076637 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | - |
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| Start bp | 2981594 |
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| End bp | 2982574 |
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| Gene Length | 981 bp |
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| Protein Length | 326 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 638008144 |
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| Product | thiamine transporter substrate binding subunit |
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| Protein accession | YP_614812 |
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| Protein GI | 99082658 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG4143] ABC-type thiamine transport system, periplasmic component |
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| TIGRFAM ID | [TIGR01254] ABC transporter periplasmic binding protein, thiB subfamily
[TIGR01276] thiamine ABC transporter, periplasmic binding protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.0458711 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.879524 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAATCCC TCATCTTTGC GAGCGCCACT TGTTTAGCTA CTGCAGTTGC CGCTGCGGAT
ACGCCGGAAT TGGTGGTCTA TACTTACGAC AGCTTTGTCT CGGAATGGGG ACCCGGACCG
GCCGTCGAAG AGGCTTTTGA AGCGGTCTGC GGATGCGATC TGAAATTCGT CGGCGCGGGC
GATGGCGCTG CGCTGCTCGC GCGGATCAAA CTGGAAGGCG CTCGGTCTGA CGCGGATGTG
GTCTTAGGGC TCGACACCAA CCTTACCGCG GCAGCCAAGG AAACCGGATT GTTTGCGCCA
GTGTCGGTTG AGGCCGATTA CGCACTGCCA ATCACCTGGA GCGACACGCA TTTTGCCCCC
TATGACTGGG GATATTTTGC ATTTGTTCAC AACGCAGATG TTCCGGCACC TTCGAACTTT
GAAGCCTTGG CTGACAGTGA TCTGAAAATC GTGATCCAGG ATCCAAGGTC CTCGACGCCG
GGACTGGGGC TCTTGATGTG GGTAAAGGCC GCATATGGGG AGGACGCGCC TGCCCTCTGG
GAAGGTCTCA GCGACAATAT CGTCACCGTC ACCAAAGGCT GGTCCGAAGC ATACGGACTG
TTCCTCGAAG GCGAGGCAGA TATGGTGCTC TCCTACACCA CGTCGCCCGC CTATCATCTG
ATCGCCGAAG AGGACGACAG CAAGTCGGCT GCACTATTCG ATGAAGGTCA CTACATGCAG
GTCGAGGTCG CGGGCAAGCT CGCGGCGAGC GATGAGAGCG CATTGGCGGA TCAGTTCCTC
GAGTTCATGG TCTCTGATGC CTTCCAGTCG ATCATCCCAA CCACAAACTG GATGTACCCC
GCCGTCACGC CTGATTCAGG CTTGCCACAG GGGTTTGAAA CCCTGATCAG CCCGGAGAAA
TCACTGCTTC TGCCCGAGGA CGAAGCCGCT GCGCTGCGCG CCGAGGCGTT GGAAGAATGG
CGCGCAGCGC TCAGCCGATA A
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| Protein sequence | MKSLIFASAT CLATAVAAAD TPELVVYTYD SFVSEWGPGP AVEEAFEAVC GCDLKFVGAG
DGAALLARIK LEGARSDADV VLGLDTNLTA AAKETGLFAP VSVEADYALP ITWSDTHFAP
YDWGYFAFVH NADVPAPSNF EALADSDLKI VIQDPRSSTP GLGLLMWVKA AYGEDAPALW
EGLSDNIVTV TKGWSEAYGL FLEGEADMVL SYTTSPAYHL IAEEDDSKSA ALFDEGHYMQ
VEVAGKLAAS DESALADQFL EFMVSDAFQS IIPTTNWMYP AVTPDSGLPQ GFETLISPEK
SLLLPEDEAA ALRAEALEEW RAALSR
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