Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_2772 |
Symbol | |
ID | 4077644 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008044 |
Strand | - |
Start bp | 2923147 |
End bp | 2925219 |
Gene Length | 2073 bp |
Protein Length | 690 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 638008097 |
Product | penicillin-binding protein 1C |
Protein accession | YP_614766 |
Protein GI | 99082612 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG4953] Membrane carboxypeptidase/penicillin-binding protein PbpC |
TIGRFAM ID | [TIGR02073] penicillin-binding protein 1C |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | GTGGCAGGCC CTCACAGGCG CTGGCGCTCA CCGCTCAGGC TTCCACTTCT GGGCCTGCTG ATTGCAGCGG TCATTGCGGG AAAAGCGCTG GATCAATGGG TTGAGGACAC GCGCCTACCA CAGACCTTGG CCGAAACTTC GGTTGAAGTG CGGGACCGCC ATGGTCGGCT CCTGCGCGCT TTTCCGGTAG AAGATGGCAT CTGGCGCATG GCGGTCCGCT CTGAAGAAGT GGACCCCACG TATCTGCGCA TGTTGCGCGC CTATGAAGAC AAACGGTTCG ACACCCACTT CGGAGTAGAT CCGGTCGCGA TGCTGCGCGC CTTTGGGCAG GCCGTGTGGA ATGGACGGAC CGTCTCGGGG GGCTCCACTC TCACGATGCA GGTCGCACGG TTGCTCGAGG ATGGGCCGAC CGGGCGCTGG TCTGGAAAGC TGCGCCAGAT CCGTGTCGCG CTGGCTCTGG AACGCAAGCT CTCCAAGACC GAGATCCTCA ATCTCTACCT CATTCACGCA CCATTTGGTG GGAATCTCGA AGGGGTGCGC GCCGCAAGTC TTTCCTGGTT TGGCAAGGAG CCACATCGCT TGACCGCTGC GGAAGCTGCG CTTCTGGTGG CACTGCCGCA ATCACCAGAG ACACGCCGTC CTGACCGATC GGTAAGTGCG GCGCGAGAGG CACGGAGACG CGTGCTCAAT CGCAGCCAAG ACGCAGGCGT ACTGACGACG GAAGTGGCAC ATCTCGCCGC CGTTGCGCCG CTACCTGACA GGCGGCGGGC GTTCCCCCTG CTGGCACCTC ATCTGAGCGA TCAACTCCGC GCGACAGCCC CGGCACAGGC GCGGTTTGAC ACCACATTGG ATGCGATGCT TCAGGCGCGG CTTCAGGCGG TGCTATCGCG CAGGGTCAAG GTCTCTGGTG CACGGCTGAG CGCAGCGATG ATTGTTGCCG ATCACCAAAG CGGGGAGATA TTGGTGCGGA TCGGGGCGCC CGATTACACG GATACCGCGC GGCGGAGTTA CGTCGATATG GCGCGCGCGG TGCGTTCGCC GGGCTCTACT CTGAAACCGC TGGTCTACGG TCTCGCCTTT GACGATGGGC TTGCGCATCC TGATACGCTG ATCCGCGATG CGCCCGTGTC CTTTGGTGGC TACGCACCTC AGAACTTTGA TGGTGCATTT CGCGGAGATG TGCGGGTGCG CGACGCGTTG CAGATGTCTT TGAACACCCC GGTCGTCACC TTGACCGAGG CGCTTGGACC GTCGCGGCTG ATGGCCGCAA TGCGGCAGGT CGGCATGCGA CCCCAACTCC CTAGCGGAAA GCCGGGGCTG GCGGTCAGCC TCGGCGGTGT TGGTGTGAGT CTTCATGATC TGGTGCAAAT GTATGCGGTC GTTGCTGCCG GCGGAACGGC ACCGAGGCTT ACCTCCGAGA CCGGAGCTGC GCGGGAAAAG ACCCCAAGGG TAATGTCGCC GGTTGCAGCT TGGTATCTTG GGGACATCCT GCGCGATGCT CCGGCGCCCG CCGGGGCGCG CGGTGGTATG TTGCCCTACA AGACAGGCAC GTCTTACGGG CACCGAGATG CTTGGGCTGT GGGCTGGGAC GGGCGGCATG TGATCGGAGT CTGGCTCGGA CGAGCGGACG GCACGCCGGT GCCGGGTGTC TTTGGCGCGG AGCTGGCGGC ACCGGTGCTG TTCGAAGCCT TTGCCGTTTT AAAACCGGAG ATTGATCCTC TGTCCCCGCC CCCTTCGAAC GCACTGGTGT TGGAGACCGC AGAGCTCCCG GCCCCTCTGC AACGGTTTCG CGCCCGGTCA GAGACTTTTT CAGAGGCCGG CGCCGGGGCG CCAGAGGTGC TTTTCCCACC CACCCATGCC CGGCTTTCGT TGGTGGAGGG GCGGATGGCG TTGAAATTGC GGGGAGGTCG GTTGCCCTTT ACCGTGCTGG CCAATGGCGT GCCGGTGGCC CAAGGCCTGA GGTCACGCGA CCTCGACCTT CCGAGCCCCG GGCCGGGCCA TGCAACGCTT GTGGTGATCG ATGCAGACGG GCAATCTGCA CGGGTGACCG TTGAAATCGA GGAGACCGGC TAA
|
Protein sequence | MAGPHRRWRS PLRLPLLGLL IAAVIAGKAL DQWVEDTRLP QTLAETSVEV RDRHGRLLRA FPVEDGIWRM AVRSEEVDPT YLRMLRAYED KRFDTHFGVD PVAMLRAFGQ AVWNGRTVSG GSTLTMQVAR LLEDGPTGRW SGKLRQIRVA LALERKLSKT EILNLYLIHA PFGGNLEGVR AASLSWFGKE PHRLTAAEAA LLVALPQSPE TRRPDRSVSA AREARRRVLN RSQDAGVLTT EVAHLAAVAP LPDRRRAFPL LAPHLSDQLR ATAPAQARFD TTLDAMLQAR LQAVLSRRVK VSGARLSAAM IVADHQSGEI LVRIGAPDYT DTARRSYVDM ARAVRSPGST LKPLVYGLAF DDGLAHPDTL IRDAPVSFGG YAPQNFDGAF RGDVRVRDAL QMSLNTPVVT LTEALGPSRL MAAMRQVGMR PQLPSGKPGL AVSLGGVGVS LHDLVQMYAV VAAGGTAPRL TSETGAAREK TPRVMSPVAA WYLGDILRDA PAPAGARGGM LPYKTGTSYG HRDAWAVGWD GRHVIGVWLG RADGTPVPGV FGAELAAPVL FEAFAVLKPE IDPLSPPPSN ALVLETAELP APLQRFRARS ETFSEAGAGA PEVLFPPTHA RLSLVEGRMA LKLRGGRLPF TVLANGVPVA QGLRSRDLDL PSPGPGHATL VVIDADGQSA RVTVEIEETG
|
| |