| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_2772 |
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| Symbol | |
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| ID | 4077644 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | - |
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| Start bp | 2923147 |
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| End bp | 2925219 |
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| Gene Length | 2073 bp |
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| Protein Length | 690 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 638008097 |
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| Product | penicillin-binding protein 1C |
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| Protein accession | YP_614766 |
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| Protein GI | 99082612 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG4953] Membrane carboxypeptidase/penicillin-binding protein PbpC |
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| TIGRFAM ID | [TIGR02073] penicillin-binding protein 1C |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGCAGGCC CTCACAGGCG CTGGCGCTCA CCGCTCAGGC TTCCACTTCT GGGCCTGCTG
ATTGCAGCGG TCATTGCGGG AAAAGCGCTG GATCAATGGG TTGAGGACAC GCGCCTACCA
CAGACCTTGG CCGAAACTTC GGTTGAAGTG CGGGACCGCC ATGGTCGGCT CCTGCGCGCT
TTTCCGGTAG AAGATGGCAT CTGGCGCATG GCGGTCCGCT CTGAAGAAGT GGACCCCACG
TATCTGCGCA TGTTGCGCGC CTATGAAGAC AAACGGTTCG ACACCCACTT CGGAGTAGAT
CCGGTCGCGA TGCTGCGCGC CTTTGGGCAG GCCGTGTGGA ATGGACGGAC CGTCTCGGGG
GGCTCCACTC TCACGATGCA GGTCGCACGG TTGCTCGAGG ATGGGCCGAC CGGGCGCTGG
TCTGGAAAGC TGCGCCAGAT CCGTGTCGCG CTGGCTCTGG AACGCAAGCT CTCCAAGACC
GAGATCCTCA ATCTCTACCT CATTCACGCA CCATTTGGTG GGAATCTCGA AGGGGTGCGC
GCCGCAAGTC TTTCCTGGTT TGGCAAGGAG CCACATCGCT TGACCGCTGC GGAAGCTGCG
CTTCTGGTGG CACTGCCGCA ATCACCAGAG ACACGCCGTC CTGACCGATC GGTAAGTGCG
GCGCGAGAGG CACGGAGACG CGTGCTCAAT CGCAGCCAAG ACGCAGGCGT ACTGACGACG
GAAGTGGCAC ATCTCGCCGC CGTTGCGCCG CTACCTGACA GGCGGCGGGC GTTCCCCCTG
CTGGCACCTC ATCTGAGCGA TCAACTCCGC GCGACAGCCC CGGCACAGGC GCGGTTTGAC
ACCACATTGG ATGCGATGCT TCAGGCGCGG CTTCAGGCGG TGCTATCGCG CAGGGTCAAG
GTCTCTGGTG CACGGCTGAG CGCAGCGATG ATTGTTGCCG ATCACCAAAG CGGGGAGATA
TTGGTGCGGA TCGGGGCGCC CGATTACACG GATACCGCGC GGCGGAGTTA CGTCGATATG
GCGCGCGCGG TGCGTTCGCC GGGCTCTACT CTGAAACCGC TGGTCTACGG TCTCGCCTTT
GACGATGGGC TTGCGCATCC TGATACGCTG ATCCGCGATG CGCCCGTGTC CTTTGGTGGC
TACGCACCTC AGAACTTTGA TGGTGCATTT CGCGGAGATG TGCGGGTGCG CGACGCGTTG
CAGATGTCTT TGAACACCCC GGTCGTCACC TTGACCGAGG CGCTTGGACC GTCGCGGCTG
ATGGCCGCAA TGCGGCAGGT CGGCATGCGA CCCCAACTCC CTAGCGGAAA GCCGGGGCTG
GCGGTCAGCC TCGGCGGTGT TGGTGTGAGT CTTCATGATC TGGTGCAAAT GTATGCGGTC
GTTGCTGCCG GCGGAACGGC ACCGAGGCTT ACCTCCGAGA CCGGAGCTGC GCGGGAAAAG
ACCCCAAGGG TAATGTCGCC GGTTGCAGCT TGGTATCTTG GGGACATCCT GCGCGATGCT
CCGGCGCCCG CCGGGGCGCG CGGTGGTATG TTGCCCTACA AGACAGGCAC GTCTTACGGG
CACCGAGATG CTTGGGCTGT GGGCTGGGAC GGGCGGCATG TGATCGGAGT CTGGCTCGGA
CGAGCGGACG GCACGCCGGT GCCGGGTGTC TTTGGCGCGG AGCTGGCGGC ACCGGTGCTG
TTCGAAGCCT TTGCCGTTTT AAAACCGGAG ATTGATCCTC TGTCCCCGCC CCCTTCGAAC
GCACTGGTGT TGGAGACCGC AGAGCTCCCG GCCCCTCTGC AACGGTTTCG CGCCCGGTCA
GAGACTTTTT CAGAGGCCGG CGCCGGGGCG CCAGAGGTGC TTTTCCCACC CACCCATGCC
CGGCTTTCGT TGGTGGAGGG GCGGATGGCG TTGAAATTGC GGGGAGGTCG GTTGCCCTTT
ACCGTGCTGG CCAATGGCGT GCCGGTGGCC CAAGGCCTGA GGTCACGCGA CCTCGACCTT
CCGAGCCCCG GGCCGGGCCA TGCAACGCTT GTGGTGATCG ATGCAGACGG GCAATCTGCA
CGGGTGACCG TTGAAATCGA GGAGACCGGC TAA
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| Protein sequence | MAGPHRRWRS PLRLPLLGLL IAAVIAGKAL DQWVEDTRLP QTLAETSVEV RDRHGRLLRA
FPVEDGIWRM AVRSEEVDPT YLRMLRAYED KRFDTHFGVD PVAMLRAFGQ AVWNGRTVSG
GSTLTMQVAR LLEDGPTGRW SGKLRQIRVA LALERKLSKT EILNLYLIHA PFGGNLEGVR
AASLSWFGKE PHRLTAAEAA LLVALPQSPE TRRPDRSVSA AREARRRVLN RSQDAGVLTT
EVAHLAAVAP LPDRRRAFPL LAPHLSDQLR ATAPAQARFD TTLDAMLQAR LQAVLSRRVK
VSGARLSAAM IVADHQSGEI LVRIGAPDYT DTARRSYVDM ARAVRSPGST LKPLVYGLAF
DDGLAHPDTL IRDAPVSFGG YAPQNFDGAF RGDVRVRDAL QMSLNTPVVT LTEALGPSRL
MAAMRQVGMR PQLPSGKPGL AVSLGGVGVS LHDLVQMYAV VAAGGTAPRL TSETGAAREK
TPRVMSPVAA WYLGDILRDA PAPAGARGGM LPYKTGTSYG HRDAWAVGWD GRHVIGVWLG
RADGTPVPGV FGAELAAPVL FEAFAVLKPE IDPLSPPPSN ALVLETAELP APLQRFRARS
ETFSEAGAGA PEVLFPPTHA RLSLVEGRMA LKLRGGRLPF TVLANGVPVA QGLRSRDLDL
PSPGPGHATL VVIDADGQSA RVTVEIEETG
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