| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_2764 |
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| Symbol | |
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| ID | 4077636 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 2910652 |
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| End bp | 2913459 |
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| Gene Length | 2808 bp |
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| Protein Length | 935 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 638008089 |
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| Product | DNA polymerase I |
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| Protein accession | YP_614758 |
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| Protein GI | 99082604 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0258] 5'-3' exonuclease (including N-terminal domain of PolI)
[COG0749] DNA polymerase I - 3'-5' exonuclease and polymerase domains |
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| TIGRFAM ID | [TIGR00593] DNA polymerase I |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCACTA GCAATTTTGG CAAAGGCTGT CACCTCCACC TGATCGATGG CTCCGCCTTC
ATCTTTCGCG CCTACCACGC GCTGCCGCCG CTGACGCGCA AATCCGACGG GCTGCCCATC
GGCGCGGTCT CGGGGTTCTG CAACATGCTG TTCAAACAGG TCGAGGACAA CAAGGGCCCC
GATGCGCCGA CCCATGTGGC GGTGATCTTT GACCACTCCG GCAAATCGTT TCGCAACGAT
ATGTACGATC AGTACAAGGC CAATCGCCCC CCCGCGCCGG AGGATCTGGT GCCGCAGTTC
CCGCTGACGC GCGAGGCCAC CCGCGCCTTC AACATCGCCT GCAAGGAGAT CGAAGGCTTT
GAGGCCGATG ACATCATCGC TACATTGGCC TGTCAGGCGC GCGAGGCCGG GGGCCGCGTG
ACGATCATCT CGTCAGATAA GGACCTGATG CAGCTGGTCG GGGACGGGGT CGAGATGCTC
GACGCGATGA AGAACAAGCG CATCGACAGC GATGGCGTGC GCGAGAAATT CGGCGTCGGC
CCCGACCGGG TTGTGGATGT GCAGGCGCTT GCGGGCGACT CTGTTGACAA CGTGCCCGGC
GCGCCCGGCA TCGGCATCAA GACCGCCGCG CTCCTGATCA ACGAGTTCGG CTCGCTGGAG
GATCTGCTGG ATCGCGCCGA AGAGATCAAG CAGCCCAAGC GTCGTCAAAC CCTGATCGAG
AAGCGCGACC AGATCGAGAT GTCGAAACGG CTGGTGCAGC TGGATTGCGA CATGGAGCTG
GACTTCACGC TCGACGATCT GGAGGTGCGC GATCCGGATG CAGATACGCT CTTGGGCTTC
CTCGCCGAGA TGGAATTCCG CACCCTGTCC AAGCGAATGG CCGACCAGCT GGGCCGCGAG
GCCCCGACCA TCCCCGAAGC GCCCTCCGCC GCAGCCGCCG CGCTGGAGCT GCCCGAAGCG
CCGGGCTTTG ACAGTGCCGA ATATACCACC GTGCGCGACG CCGAGACCCT TCAGCAGTGG
ATCGATCTCA TTCGTGAGCA TGGCTATGTC GCGGTCGATA CCGAGACCAC CGGCCTTAAC
GAGATGATCG CGGATCTCGT TGGCATCAGC CTATGTGTGG TTCCGGGGCA GGCCTGCTAT
GTGCCGCTCA CACATAAGAC GGGGAACTCC GACGATCTCT TTGGCTCTGA CGATCTGGCC
GAGGGGCAGA TGCCGCTCAA GGACGCGCTG GAGATGCTGA AACCGGTGCT GGAGGATGAC
GCCATCCTCA AGATCGGCCA GAACATGAAA TACGATGCCA AGATCTTTGC CCGTAACGGC
ATCGACGTGA CCCCGATCGA CGACACCATG TTGTTGTCCT ATGCGCTTCA TGGCGGCATG
CACGGACATG GGATGGATAC GCTGTCGGAG CGCTATCTCG ACCATCAGCC GATCCCGATC
AAATCGCTCT TGGGGAGCGG AAAATCCGCG ATCACATTTG ACCGGGTGTC GATAGAGGAC
GCCACGCCCT ATGCGGCCGA GGACGCCGAC ATCACCCTGC GCCTCTGGCA GCAGTTCAAA
CCGCAGTTGC ACCAGAAACA GGTGACCACC GTCTACGAGA CCTTGGAACG CCCGCTGGTG
CCGGTGCTGG CGCAGATGGA ACAACATGGC ATCAAGGTGG ACCGCGACAC GCTCAGCCGT
ATGTCGAACG CGTTCTCACA AAAAATGGCC GCGCTCGAGG CAGAGATCCA CGAGCTCGCG
GGCGAGACCT TCAATGTCGG CTCCCCCAAG CAGCTGGGCG AGATCCTTTT TGACAAGATG
TCTCTGCCGG GGGGCAAGAA GGGCAAGACC GGTGCCTATG CCACCGGGGC GGACATTCTT
GAGGATCTGG CCACGGAGCA TACCTTGCCC GCGCGCGTGT TGGACTGGCG GCAACTCTCC
AAGCTGAAAT CCACGTACAC AGACGCGCTT CAGGAGCACA TCCATCCCGA AACCGGGCGG
GTACATACGT CTTATTTGCA GACCGGCGCC AACACTGGGC GTCTGGCCTC GAGCGATCCC
AACCTGCAAA ACATCCCCGT GCGCAGCGAA GAGGGACGCC GCATCCGCGA GGCCTTTGTC
GCAGACGAGG GCAATGTGCT TCTGTCGCTC GACTACAGCC AGATCGAGCT GCGCATCCTG
GCCCATGTTG CGGGAATCGA TGCGCTAAAA CAGGCGTTTG CCGACGGCCA CGACATCCAC
GCGATGACCG CCTCCGAGGT CTTTGATGTG CCACTTGAGG AGATGACTCC GGACATTCGC
CGCAAGGCCA AGGCGATCAA CTTTGGCGTG ATCTATGGGA TTTCGGGCTT TGGGCTTGCA
CGCAACCTGC GTATTCCGCG CGGCGAGGCC CAGGGATTTA TCGACCGCTA TTTCGAGCGT
TTCCCCGGCA TTCGTCAGTA TATGGATGAC ACGGTGAACT TCGCCAAGGA GCACGGTTAT
GTGCAAACGC TCTTTGGCCG TAAGATCCAC ACGCCGGAGA TCGCAGCCAA GGGACCGCGT
GCGAGCTTTG CAAAACGCGC GGCTATCAAC GCGCCCATTC AGGGCACGGC CGCAGATGTC
ATCCGGCGCG CCATGGTGCG TATGCCAGAG GCCATCGCCC ACCTGCCCGC GCGCATGCTG
CTGCAGGTCC ACGATGAATT GCTGTTCGAA GTGCCCGAGG ATCACGTCGA AGAGACGATT
TCCGTCGCCC GCGAGATCAT GGAAGGCGCG GCTGATCCGG CAGTGCATAT GGATGTAAAA
CTGGTGGTCG ACGCGGGACG CGGCCAAAAC TGGGCCGAGG CGCATTAA
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| Protein sequence | MSTSNFGKGC HLHLIDGSAF IFRAYHALPP LTRKSDGLPI GAVSGFCNML FKQVEDNKGP
DAPTHVAVIF DHSGKSFRND MYDQYKANRP PAPEDLVPQF PLTREATRAF NIACKEIEGF
EADDIIATLA CQAREAGGRV TIISSDKDLM QLVGDGVEML DAMKNKRIDS DGVREKFGVG
PDRVVDVQAL AGDSVDNVPG APGIGIKTAA LLINEFGSLE DLLDRAEEIK QPKRRQTLIE
KRDQIEMSKR LVQLDCDMEL DFTLDDLEVR DPDADTLLGF LAEMEFRTLS KRMADQLGRE
APTIPEAPSA AAAALELPEA PGFDSAEYTT VRDAETLQQW IDLIREHGYV AVDTETTGLN
EMIADLVGIS LCVVPGQACY VPLTHKTGNS DDLFGSDDLA EGQMPLKDAL EMLKPVLEDD
AILKIGQNMK YDAKIFARNG IDVTPIDDTM LLSYALHGGM HGHGMDTLSE RYLDHQPIPI
KSLLGSGKSA ITFDRVSIED ATPYAAEDAD ITLRLWQQFK PQLHQKQVTT VYETLERPLV
PVLAQMEQHG IKVDRDTLSR MSNAFSQKMA ALEAEIHELA GETFNVGSPK QLGEILFDKM
SLPGGKKGKT GAYATGADIL EDLATEHTLP ARVLDWRQLS KLKSTYTDAL QEHIHPETGR
VHTSYLQTGA NTGRLASSDP NLQNIPVRSE EGRRIREAFV ADEGNVLLSL DYSQIELRIL
AHVAGIDALK QAFADGHDIH AMTASEVFDV PLEEMTPDIR RKAKAINFGV IYGISGFGLA
RNLRIPRGEA QGFIDRYFER FPGIRQYMDD TVNFAKEHGY VQTLFGRKIH TPEIAAKGPR
ASFAKRAAIN APIQGTAADV IRRAMVRMPE AIAHLPARML LQVHDELLFE VPEDHVEETI
SVAREIMEGA ADPAVHMDVK LVVDAGRGQN WAEAH
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