| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_2705 |
|---|
| Symbol | |
|---|
| ID | 4077012 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | + |
|---|
| Start bp | 2847805 |
|---|
| End bp | 2850138 |
|---|
| Gene Length | 2334 bp |
|---|
| Protein Length | 777 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 638008030 |
|---|
| Product | xanthine oxidase / xanthine dehydrogenase, molybdenum binding subunit apoprotein |
|---|
| Protein accession | YP_614699 |
|---|
| Protein GI | 99082545 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG4631] Xanthine dehydrogenase, molybdopterin-binding subunit B |
|---|
| TIGRFAM ID | [TIGR02965] xanthine dehydrogenase, molybdopterin binding subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.233827 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGATC TGGGCAATAC CACAGAGATC AAAGGTGCCG CGCATCAGGA TCTCAAACAC
GAGAGCGCCA TCAAACAGGT GCAGGGCCGC GCCGACTACA CCGACGACAT CCTGGAACCC
GCAGGCACGC TGCATGCCTA TCTCGGCGTG TCTACCGTCG CCCATGCCAA CATCCGCGGC
ATGGATCTGA GCCGTGTGCG CGCCGCGCCC GGTGTCGTCG ATGTGCTGAC AGCGGATGAT
ATTCCCGGCG TTAATGACGT GAGCCCCACG GGCAAACATG ACGAGCCGGT GTTTCCAACC
GAGAAGGTGG AGTTTCATGG CCAGCCGCTC TTTGCGGTGA TTGCCGAGAG CCGCGATGCC
GCACGCCGCG CCGCGGAGCT TGCGGATGTA GACTATGAGG TGCTGCCCCA CGCGCTCGAT
GCGATTTCGG CGCGGGATGC GGGGTTGCCC ATGGTCACCG ACCCGCTGAA GCTCGAGCGC
GGTGATGTGG AAAGCGGCCT TGCGGAGGCA CCGCACCGGT TGCAGGGACG CGTTGTCGTC
GGCGGTCAGG ATCACATGTA TCTCGAAGGC CATATCGCCT TTGCGATTCC GGGCGAAGAT
GACGATGTGG TGGTGCATTG CTCCACCCAG CATCCGAGCG AGGCGCAGCA CATGGTGTCC
CATGTGCTCG GCGTGCCGTC GAATGCGGTG GTGGTGAACG TGCGCCGCAT GGGCGGGGGG
TTTGGCGGCA AGGAAAGCCA GATGAATCTG TTCTGCGCCT TTGCCGCCCT TGGCGCCAAG
AAGCTGAACC GTCCGGTGAA AATCCGCCCC GACCGCGATC AGGACATGAC TGCCACCGGC
AAGCGGCATG ACTTTGTGAT CGACTATGAT CTGGGCTTTG ACAATGAGGG GCGGATCGAA
GCCGTCGAGA GCCAGTTTGC CGCGCGCTGC GGCTATTCCT CGGACCTCTC CGGCCCCGTG
ACCGACCGCG CGCTGTTTCA TGCCGACAAC GCCTATTTCT ACCCCAATGT CCGTCTGACC
TCCTGTCCGC AGAAGACGAA TACAGTCTCT AACACGGCAT TTAGAGGCTT TGGCGGCCCG
CAGGGCGTGG TCGCCGCGGA ACGAATGATC GAGGAAATCG CCTATGCGCT GGGCAAGGAC
CCGCTGGAGG TGCGCAAGGC GAATTTCTAC GGCCAACCCG GTGATGGCCG CACCCTCACG
CCCTATCATC AGGAGGTGGA GGACAATGTG ATCGGTCGCA TTGTCGAGGA ACTGGAAGAG
AGCAGCGACT ATCAGGCCCG CCGCGCGGCG ATCATTGCCG AGAACACAAA GGGCGGCATC
ATCCGTCGTG GCATCGCGCT GACACCGGTC AAATTCGGCA TCTCCTTTAC TGCCACGTGG
TACAATCAGG CCGGCGCTCT GATCCACATC TACAACGATG GCTCGATCCA CCTCAATCAT
GGCGGCACCG AGATGGGGCA GGGCCTCAAC ACCAAGGTCG CGCAGGTGGT GGCCGAGGCG
TTTCAGGTCG ATTTCGACCG CATCAAGATC ACCAAGACCA CGACCGAAAA AGTCCCGAAC
ACCTCTGCCA CGGCGGCCTC TTCGGGGTCC GACCTCAACG GGATGGCGGC GCTGGATGCC
TGCGAGCAGA TCAAGGCGCG GCTGGTGAAA TTTGCCGCCG AGAGCCGGGG CGTGGCCGAA
AGCGCCGTGC GCTTTGGACC CAACCAGATC CGCATCGGCG AGGAGGTGGT GGACTTTGCC
GCCTTTATCC GCGAGGCCTA TATGGCGCGG GTGCATCTGT CGGCGGCAGG GTTCTACAAG
ACGCCCAAGA TCCATTGGGA CCGTGCGGCG GGCAAGGGAC GGCCGTTCTA CTATTACGCC
TATGGCGCGT CCTGCTCGGA GGTTTCCATC GATACGCTCA CCGGCGAGTA CCGGGTGGAG
CGCACCGACA TCCTGCATGA CGTGGGCCGA TCCCTTAATC CGATCCTCGA CAAGGGGCAG
GTCGAAGGCG CGTTTATTCA GGGCATGGGC TGGCTCACCA CAGAGGAGCT CTGGTGGGAC
AAAGACGGGC GCCTGCGCAC CCATGCGCCT TCGACCTACA AGATCCCGCT GGCCTCTGAC
CGCCCGCGCA GCTTCAACGT GAAGCTCGCC GACTGGTCTG AAAACCGCGA GATGACCATC
AAACGCTCTA AGGCGGTGGG CGAGCCGCCC TTCATGCTGG GGATTTCTGT TCTGGAGGCG
CTGTCGATGG CGGTGGCCTC GGTTGCCGAC TATCGTGAGT GCCCGCGTCT TGAGGCCCCC
GCCACGCCCG AACGCGTGCT GATGGCGGTG GAACGTCTTA AGGCCGGAGG CTGA
|
|---|
| Protein sequence | MKDLGNTTEI KGAAHQDLKH ESAIKQVQGR ADYTDDILEP AGTLHAYLGV STVAHANIRG
MDLSRVRAAP GVVDVLTADD IPGVNDVSPT GKHDEPVFPT EKVEFHGQPL FAVIAESRDA
ARRAAELADV DYEVLPHALD AISARDAGLP MVTDPLKLER GDVESGLAEA PHRLQGRVVV
GGQDHMYLEG HIAFAIPGED DDVVVHCSTQ HPSEAQHMVS HVLGVPSNAV VVNVRRMGGG
FGGKESQMNL FCAFAALGAK KLNRPVKIRP DRDQDMTATG KRHDFVIDYD LGFDNEGRIE
AVESQFAARC GYSSDLSGPV TDRALFHADN AYFYPNVRLT SCPQKTNTVS NTAFRGFGGP
QGVVAAERMI EEIAYALGKD PLEVRKANFY GQPGDGRTLT PYHQEVEDNV IGRIVEELEE
SSDYQARRAA IIAENTKGGI IRRGIALTPV KFGISFTATW YNQAGALIHI YNDGSIHLNH
GGTEMGQGLN TKVAQVVAEA FQVDFDRIKI TKTTTEKVPN TSATAASSGS DLNGMAALDA
CEQIKARLVK FAAESRGVAE SAVRFGPNQI RIGEEVVDFA AFIREAYMAR VHLSAAGFYK
TPKIHWDRAA GKGRPFYYYA YGASCSEVSI DTLTGEYRVE RTDILHDVGR SLNPILDKGQ
VEGAFIQGMG WLTTEELWWD KDGRLRTHAP STYKIPLASD RPRSFNVKLA DWSENREMTI
KRSKAVGEPP FMLGISVLEA LSMAVASVAD YRECPRLEAP ATPERVLMAV ERLKAGG
|
|---|
| |